HHsearch alignment for GI: 254780525 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=7.1e-43 Score=290.86 Aligned_cols=230 Identities=25% Similarity=0.378 Sum_probs=188.5
Q ss_pred CCCEEEEEEECCCCEEEEEEEECCC-----CCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 2210367540688736778762135-----555420477630444446-5666644321001220244564457765332
Q gi|254780525|r 191 THKSSFAAYDTLGSSVVYDVYYTKT-----GDKKWEVSIFRQDQSTNN-SFPYNVAPLNTVEVSFDPVTGYLANSSHKAI 264 (421)
Q Consensus 191 ~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
T Consensus 633 ~h~a~~dIvDSLGsKHtl~v~F~K~sttqDG~~eW~f~~~VPEPA~f~~gsge~p~~fegGra~Fn~-DGsL~g~nPpti 711 (877)
T TIGR02489 633 AHSAGLDIVDSLGSKHTLEVEFVKQSTTQDGDNEWSFIIRVPEPAEFVNGSGEKPNIFEGGRARFNE-DGSLAGMNPPTI 711 (877)
T ss_pred HHCCCEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEECCCCCCCCCEECCCEEEECC-CCCCCCCCCCCE
T ss_conf 2124303654388802479999986402568850489998489851525634765162364188788-766476888621
Q ss_pred CCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCEEC
Q ss_conf 124677665543323-333------31002333343233444332344344--554776338998414321101222001
Q gi|254780525|r 265 SFNDNTSGIDQQITI-DIS------KTTQLAGGFIPQKSEINGHAPGKPKD--FSVSKDGYVDIIYDDGTRVPIYRLAIA 335 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (421)
T Consensus 712 ~F~PknGa~~pQri~L~FG~sgtf~GL~S~dk~S~~~~~~~nGY~sG~L~dDaiR~D~~G~LlGeFsNGk~~alA~vA~A 791 (877)
T TIGR02489 712 QFDPKNGAASPQRIELSFGTSGTFDGLTSSDKASTTTGIAQNGYQSGNLKDDAIRFDSNGNLLGEFSNGKTLALAQVALA 791 (877)
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21777887788406775276542687312133100125133661357877550787378747553038603687788877
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21786787741695266323358702137888761146523100047789999999999999999999999999999999
Q gi|254780525|r 336 TVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDI 415 (421)
Q Consensus 336 ~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldt 415 (421)
T Consensus 792 s~aNN~GL~a~GgNlf~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~T 871 (877)
T TIGR02489 792 SFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNT 871 (877)
T ss_pred HHCCCCCHHHHCCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHH
T ss_conf 30054330212671154313438820632588887860445210010046664301277651411456403015789999
Q ss_pred HHHHCC
Q ss_conf 975129
Q gi|254780525|r 416 LISLKR 421 (421)
Q Consensus 416 Llnl~R 421 (421)
T Consensus 872 LlqLKQ 877 (877)
T TIGR02489 872 LLQLKQ 877 (877)
T ss_pred HHHHCC
T ss_conf 974059