HHsearch alignment for GI: 254780525 and conserved domain: TIGR02489

>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00  E-value=7.1e-43  Score=290.86  Aligned_cols=230  Identities=25%  Similarity=0.378  Sum_probs=188.5

Q ss_pred             CCCEEEEEEECCCCEEEEEEEECCC-----CCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             2210367540688736778762135-----555420477630444446-5666644321001220244564457765332
Q gi|254780525|r  191 THKSSFAAYDTLGSSVVYDVYYTKT-----GDKKWEVSIFRQDQSTNN-SFPYNVAPLNTVEVSFDPVTGYLANSSHKAI  264 (421)
Q Consensus       191 ~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (421)
T Consensus       633 ~h~a~~dIvDSLGsKHtl~v~F~K~sttqDG~~eW~f~~~VPEPA~f~~gsge~p~~fegGra~Fn~-DGsL~g~nPpti  711 (877)
T TIGR02489       633 AHSAGLDIVDSLGSKHTLEVEFVKQSTTQDGDNEWSFIIRVPEPAEFVNGSGEKPNIFEGGRARFNE-DGSLAGMNPPTI  711 (877)
T ss_pred             HHCCCEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEECCCCCCCCCEECCCEEEECC-CCCCCCCCCCCE
T ss_conf             2124303654388802479999986402568850489998489851525634765162364188788-766476888621


Q ss_pred             CCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCEEC
Q ss_conf             124677665543323-333------31002333343233444332344344--554776338998414321101222001
Q gi|254780525|r  265 SFNDNTSGIDQQITI-DIS------KTTQLAGGFIPQKSEINGHAPGKPKD--FSVSKDGYVDIIYDDGTRVPIYRLAIA  335 (421)
Q Consensus       265 ~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (421)
T Consensus       712 ~F~PknGa~~pQri~L~FG~sgtf~GL~S~dk~S~~~~~~~nGY~sG~L~dDaiR~D~~G~LlGeFsNGk~~alA~vA~A  791 (877)
T TIGR02489       712 QFDPKNGAASPQRIELSFGTSGTFDGLTSSDKASTTTGIAQNGYQSGNLKDDAIRFDSNGNLLGEFSNGKTLALAQVALA  791 (877)
T ss_pred             EECCCCCCCCCCEEEEECCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             21777887788406775276542687312133100125133661357877550787378747553038603687788877


Q ss_pred             CCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21786787741695266323358702137888761146523100047789999999999999999999999999999999
Q gi|254780525|r  336 TVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDI  415 (421)
Q Consensus       336 ~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldt  415 (421)
T Consensus       792 s~aNN~GL~a~GgNlf~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~T  871 (877)
T TIGR02489       792 SFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNT  871 (877)
T ss_pred             HHCCCCCHHHHCCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHH
T ss_conf             30054330212671154313438820632588887860445210010046664301277651411456403015789999


Q ss_pred             HHHHCC
Q ss_conf             975129
Q gi|254780525|r  416 LISLKR  421 (421)
Q Consensus       416 Llnl~R  421 (421)
T Consensus       872 LlqLKQ  877 (877)
T TIGR02489       872 LLQLKQ  877 (877)
T ss_pred             HHHHCC
T ss_conf             974059