HHsearch alignment for GI: 254780525 and conserved domain: TIGR02490
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.78 E-value=6.7e-18 Score=131.69 Aligned_cols=236 Identities=23% Similarity=0.350 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHH-HCCCCCCCCCCCEEE--EEEEEEECCCCEEECCCHHH
Q ss_conf 899999999999986378877530277867142200246543-047777631220588--57886303411121483022
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV-FPSTSNSYVSGGLEI--STKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~-~~~~~~~~~G~GV~v--~~i~r~~~~~~~~~t~~~~d 82 (421)
T Consensus 1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~~Mv~G~G~---ptR~~v~~~~~G~D~~~G~~~~TGR~LD 77 (254)
T TIGR02490 1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAVPMVDGDGL---PTRTFVLASTPGADFSPGSLQTTGRDLD 77 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC---CHHHHHHCCCCCCCCCCCCCEECCCCCC
T ss_conf 9001366899999999999865422570678999988663000027984---0566422135367888886023487300
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG 162 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
T Consensus 78 vA~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PV-------------------------------------- 119 (254)
T TIGR02490 78 VALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPV-------------------------------------- 119 (254)
T ss_pred EEECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCE--------------------------------------
T ss_conf 446488528987799586111427610165541311178737--------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r 163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (421)
T Consensus 120 ------------------------------------lG~gGgPI~----------------------------------- 128 (254)
T TIGR02490 120 ------------------------------------LGEGGGPIT----------------------------------- 128 (254)
T ss_pred ------------------------------------EECCCCEEE-----------------------------------
T ss_conf ------------------------------------507986145-----------------------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEE
Q ss_conf 100122024456445776533212467766554332333331002333343233444332344-3445547763389984
Q gi|254780525|r 243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGK-PKDFSVSKDGYVDIIY 321 (421)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (421)
T Consensus 129 ------------------------------------------------------------~P~P~~~~~Ig~DGTis~~p 148 (254)
T TIGR02490 129 ------------------------------------------------------------IPPPYSKIEIGADGTISVIP 148 (254)
T ss_pred ------------------------------------------------------------ECCCCCEEEECCCCEEEEEC
T ss_conf ------------------------------------------------------------36887648871776188865
Q ss_pred CCCCCCCC---CCCEECCCCCH---HHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHH
Q ss_conf 14321101---22200121786---7877416952663233587021378887611465231000477899999999999
Q gi|254780525|r 322 DDGTRVPI---YRLAIATVPSE---DNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEA 395 (421)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~n~---~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~ 395 (421)
T Consensus 149 ~G~~~~~~~~vgrlKLV~-P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv~mI~l 227 (254)
T TIGR02490 149 PGDPPNAVQEVGRLKLVK-PDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMVSMISL 227 (254)
T ss_pred CCCCCCCHHHCCCCCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 888975232403223458-7877355242588842333687777889865668863450685547775288999999987
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780525|r 396 QRNYAVNSKVFQTGSDFMD 414 (421)
Q Consensus 396 Q~aYqAsArvItt~demld 414 (421)
T Consensus 228 ~RqFE~Q~Kmm~tA~~na~ 246 (254)
T TIGR02490 228 SRQFEMQVKMMKTAEDNAQ 246 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 5346778899987878899