Query gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 421
No_of_seqs 133 out of 3438
Neff 10.3
Searched_HMMs 39220
Date Mon May 30 00:43:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780525.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05682 flgE flagellar hook p 100.0 0 0 385.5 29.0 408 1-420 1-414 (414)
2 PRK08425 flgE flagellar hook p 100.0 0 0 374.1 24.4 137 285-421 580-716 (716)
3 PRK06803 flgE flagellar hook p 100.0 0 0 367.2 25.6 394 1-420 1-398 (398)
4 COG1749 FlgE Flagellar hook pr 100.0 0 0 357.7 23.8 412 3-421 1-423 (423)
5 PRK05841 flgE flagellar hook p 100.0 0 0 348.4 23.5 419 3-421 1-605 (605)
6 PRK12637 flgE flagellar hook p 100.0 0 0 345.1 25.4 395 7-420 3-473 (473)
7 TIGR02488 flgG_G_neg flagellar 100.0 0 0 315.3 15.0 243 6-420 1-263 (263)
8 PRK08471 flgK flagellar hook-a 100.0 0 0 326.6 0.3 76 1-76 1-77 (612)
9 PRK07521 flgK flagellar hook-a 100.0 0 0 331.3 -5.5 193 1-204 1-203 (482)
10 PRK07191 flgK flagellar hook-a 100.0 0 0 331.9 -8.2 205 1-211 1-215 (456)
11 PRK07739 flgK flagellar hook-a 100.0 0 0 329.5 -7.2 75 1-75 2-83 (500)
12 PRK06665 flgK flagellar hook-a 100.0 0 0 316.6 -2.3 76 1-76 1-84 (628)
13 PRK08147 flgK flagellar hook-a 100.0 0 0 314.3 -2.0 171 3-176 1-181 (547)
14 TIGR02492 flgK_ends flagellar 100.0 0 0 326.4 -12.1 214 5-218 1-235 (495)
15 PRK12715 flgK flagellar hook-a 100.0 4.2E-45 0 305.2 4.0 73 1-76 1-73 (649)
16 PRK12714 flgK flagellar hook-a 100.0 0 0 310.1 -1.0 73 1-76 1-73 (624)
17 PRK06799 flgK flagellar hook-a 100.0 0 0 324.5 -12.6 132 3-136 2-145 (431)
18 COG1256 FlgK Flagellar hook-as 100.0 0 0 312.3 -3.1 210 1-212 1-220 (552)
19 TIGR02489 flgE_epsilon flagell 100.0 7.1E-43 0 290.9 13.3 230 191-421 633-877 (877)
20 PRK08871 flgK flagellar hook-a 100.0 2.8E-45 0 306.6 0.2 75 1-76 1-75 (626)
21 PRK06945 flgK flagellar hook-a 100.0 3.4E-44 0 299.4 -0.3 73 4-76 2-74 (649)
22 PRK12636 flgG flagellar basal 100.0 9.9E-40 2.5E-44 270.8 20.2 250 3-421 1-263 (263)
23 PRK12691 flgG flagellar basal 100.0 2.4E-39 6E-44 268.4 19.5 246 4-421 1-262 (262)
24 PRK05683 flgK flagellar hook-a 100.0 1.1E-43 0 295.9 -4.3 73 4-76 1-73 (676)
25 PRK12816 flgG flagellar basal 100.0 9.9E-39 2.5E-43 264.4 19.8 249 3-421 1-264 (264)
26 PRK12693 flgG flagellar basal 100.0 1.2E-38 3E-43 263.9 19.5 246 3-420 1-261 (261)
27 PRK12694 flgG flagellar basal 100.0 1.8E-37 4.6E-42 256.4 19.7 245 3-419 1-260 (260)
28 PRK12692 flgG flagellar basal 100.0 1.4E-37 3.5E-42 257.2 18.9 246 4-421 1-262 (262)
29 COG4786 FlgG Flagellar basal b 100.0 3.1E-37 7.8E-42 255.0 18.0 250 3-421 1-265 (265)
30 PRK12817 flgG flagellar basal 100.0 1.2E-36 3E-41 251.2 20.3 251 3-421 1-261 (261)
31 PRK12689 flgF flagellar basal 100.0 2.8E-33 7.2E-38 229.7 18.4 239 3-418 1-246 (253)
32 TIGR03506 FlgEFG_subfam fagell 100.0 7.3E-33 1.9E-37 227.1 16.0 229 6-402 2-231 (231)
33 PRK12818 flgG flagellar basal 100.0 4.3E-32 1.1E-36 222.1 18.9 239 3-421 1-254 (255)
34 PRK12640 flgF flagellar basal 100.0 2.5E-31 6.3E-36 217.3 17.6 121 3-124 1-121 (246)
35 PRK12819 flgG flagellar basal 100.0 4.6E-31 1.2E-35 215.6 18.9 121 4-124 1-134 (257)
36 PRK12690 flgF flagellar basal 100.0 2.1E-30 5.5E-35 211.3 18.1 236 3-421 1-237 (237)
37 PRK12642 flgF flagellar basal 100.0 3.9E-29 9.9E-34 203.3 16.1 236 3-419 1-236 (241)
38 PRK12641 flgF flagellar basal 100.0 2.2E-28 5.7E-33 198.5 17.7 112 3-117 1-112 (252)
39 TIGR02490 flgF flagellar basal 99.8 6.7E-18 1.7E-22 131.7 12.9 236 6-414 1-246 (254)
40 PRK05681 flgC flagellar basal 99.7 9.7E-16 2.5E-20 117.9 12.0 68 1-68 1-74 (139)
41 PRK12643 flgF flagellar basal 99.6 4E-16 1E-20 120.4 7.0 121 3-125 1-121 (209)
42 PRK12631 flgC flagellar basal 99.5 3.2E-13 8.2E-18 101.9 12.9 46 1-46 1-52 (138)
43 COG4787 FlgF Flagellar basal b 99.4 4.2E-11 1.1E-15 88.4 13.7 110 4-114 2-111 (251)
44 PRK12632 flgC flagellar basal 99.1 8.6E-11 2.2E-15 86.4 5.4 46 376-421 84-129 (130)
45 pfam06429 DUF1078 Domain of un 99.1 2.8E-10 7.1E-15 83.2 5.7 39 381-419 1-39 (39)
46 PRK12628 flgC flagellar basal 99.1 3.4E-10 8.7E-15 82.6 6.2 47 1-47 1-53 (140)
47 PRK12630 flgC flagellar basal 99.0 8.4E-10 2.2E-14 80.1 6.8 47 1-47 1-53 (143)
48 PRK06802 flgC flagellar basal 99.0 1.2E-09 3E-14 79.1 6.4 46 376-421 95-140 (141)
49 COG1558 FlgC Flagellar basal b 98.9 2.2E-09 5.5E-14 77.5 5.7 68 1-69 1-74 (137)
50 PRK12629 flgC flagellar basal 98.9 3E-09 7.6E-14 76.6 6.4 46 376-421 90-135 (135)
51 PRK12782 flgC flagellar basal 98.9 3.1E-09 8E-14 76.4 5.9 46 376-421 92-137 (138)
52 TIGR01395 FlgC flagellar basal 98.5 8E-08 2E-12 67.5 3.9 67 4-70 1-85 (147)
53 PRK12622 flgB flagellar basal 98.5 1.4E-07 3.7E-12 65.9 4.8 47 1-47 1-48 (135)
54 PRK12621 flgB flagellar basal 98.5 2.2E-07 5.7E-12 64.6 4.6 51 2-52 3-54 (136)
55 PRK12632 flgC flagellar basal 98.4 5.6E-07 1.4E-11 62.1 6.1 64 1-68 2-65 (130)
56 PRK12782 flgC flagellar basal 98.4 7.3E-07 1.9E-11 61.3 6.3 65 1-69 3-74 (138)
57 PRK05680 flgB flagellar basal 98.4 2.8E-07 7.2E-12 64.0 4.1 49 3-51 5-53 (137)
58 PRK12625 flgB flagellar basal 98.4 3.8E-07 9.6E-12 63.2 4.7 48 1-48 1-50 (132)
59 PRK12619 flgB flagellar basal 98.4 4E-07 1E-11 63.0 4.8 50 3-52 5-54 (130)
60 PRK12624 flgB flagellar basal 98.3 6.5E-07 1.6E-11 61.7 4.6 45 5-49 9-53 (143)
61 COG1815 FlgB Flagellar basal b 98.3 7.6E-07 1.9E-11 61.2 4.9 52 1-52 2-53 (133)
62 PRK12685 flgB flagellar basal 98.3 6.3E-07 1.6E-11 61.8 4.5 47 3-49 5-51 (116)
63 PRK12623 flgB flagellar basal 98.3 6.4E-07 1.6E-11 61.7 4.5 44 6-49 12-55 (131)
64 TIGR01395 FlgC flagellar basal 98.3 8.4E-07 2.1E-11 61.0 4.7 47 375-421 101-147 (147)
65 PRK12620 flgB flagellar basal 98.3 8.9E-07 2.3E-11 60.8 4.7 50 1-50 1-52 (132)
66 pfam00460 Flg_bb_rod Flagella 98.3 3.7E-07 9.4E-12 63.2 2.5 31 7-37 1-31 (31)
67 PRK06802 flgC flagellar basal 98.3 2.3E-06 5.8E-11 58.2 6.4 67 1-67 1-76 (141)
68 PRK12629 flgC flagellar basal 98.3 2.9E-06 7.3E-11 57.6 6.4 66 1-69 1-72 (135)
69 PRK06003 flgB flagellar basal 98.2 2.5E-06 6.4E-11 57.9 4.7 48 1-48 1-49 (126)
70 PRK12630 flgC flagellar basal 98.2 5.8E-06 1.5E-10 55.6 6.4 48 374-421 96-143 (143)
71 PRK12626 flgB flagellar basal 98.1 2.6E-06 6.7E-11 57.8 3.6 47 3-49 5-51 (162)
72 PRK12628 flgC flagellar basal 98.1 1.1E-05 2.9E-10 53.8 6.2 47 374-420 93-139 (140)
73 PRK07182 flgB flagellar basal 98.0 8.5E-06 2.2E-10 54.6 4.0 47 3-49 5-51 (148)
74 PRK06797 flgB flagellar basal 97.9 3.7E-06 9.5E-11 56.9 1.9 32 17-48 15-46 (135)
75 PRK06004 flgB flagellar basal 97.9 9.5E-06 2.4E-10 54.3 3.5 37 11-47 3-42 (126)
76 COG1558 FlgC Flagellar basal b 97.9 4E-05 1E-09 50.3 6.4 48 374-421 90-137 (137)
77 PRK12627 flgB flagellar basal 97.8 4.7E-05 1.2E-09 49.8 5.0 42 6-47 7-49 (128)
78 PRK12627 flgB flagellar basal 96.0 0.019 4.9E-07 33.2 5.6 38 381-418 89-126 (128)
79 PRK06003 flgB flagellar basal 95.8 0.028 7.3E-07 32.1 5.7 36 382-417 89-124 (126)
80 PRK06004 flgB flagellar basal 95.7 0.029 7.3E-07 32.1 5.6 38 381-418 87-124 (126)
81 PRK12622 flgB flagellar basal 95.4 0.044 1.1E-06 30.9 5.7 36 382-417 99-134 (135)
82 PRK12623 flgB flagellar basal 95.3 0.051 1.3E-06 30.5 5.5 38 381-418 94-131 (131)
83 PRK05680 flgB flagellar basal 95.2 0.061 1.6E-06 30.0 5.9 40 381-420 97-136 (137)
84 COG1815 FlgB Flagellar basal b 95.2 0.055 1.4E-06 30.3 5.6 38 381-418 94-131 (133)
85 PRK12624 flgB flagellar basal 94.9 0.078 2E-06 29.3 5.6 39 381-419 104-142 (143)
86 TIGR01396 FlgB flagellar basal 94.0 0.056 1.4E-06 30.2 3.3 45 5-49 3-47 (134)
87 PRK12685 flgB flagellar basal 94.0 0.17 4.2E-06 27.2 5.7 37 381-417 77-113 (116)
88 PRK12625 flgB flagellar basal 94.0 0.16 4.2E-06 27.3 5.6 36 382-417 94-129 (132)
89 PRK12621 flgB flagellar basal 94.0 0.19 4.9E-06 26.8 5.9 38 382-419 96-133 (136)
90 PRK12619 flgB flagellar basal 93.3 0.25 6.3E-06 26.1 5.6 37 381-417 91-127 (130)
91 PRK12620 flgB flagellar basal 93.3 0.25 6.3E-06 26.1 5.6 37 381-417 93-129 (132)
92 PRK06797 flgB flagellar basal 92.5 0.19 5E-06 26.8 4.1 34 382-415 98-131 (135)
93 PRK12804 flagellin; Provisiona 92.0 0.44 1.1E-05 24.5 5.4 40 382-421 268-307 (307)
94 COG1344 FlgL Flagellin and rel 91.4 0.6 1.5E-05 23.7 5.6 40 382-421 321-360 (360)
95 pfam07559 FlaE Flagellar basal 89.5 1.2 3.2E-05 21.7 8.6 63 185-251 4-66 (117)
96 PRK12802 flagellin; Provisiona 89.4 1.1 2.9E-05 21.9 5.6 40 382-421 243-282 (282)
97 PRK12807 flagellin; Provisiona 89.2 1.2 2.9E-05 21.9 5.5 40 382-421 248-287 (287)
98 pfam00700 Flagellin_C Bacteria 87.9 1.4 3.6E-05 21.3 5.2 36 382-419 48-83 (84)
99 PRK08869 flagellin; Reviewed 87.1 1.5 3.8E-05 21.1 5.0 40 382-421 338-377 (377)
100 PRK08412 flgL flagellar hook-a 86.8 0.94 2.4E-05 22.4 3.8 31 382-412 741-771 (777)
101 PRK08870 flgL flagellar hook-a 85.2 1.4 3.5E-05 21.4 4.0 36 381-418 366-401 (403)
102 PRK06819 flagellin; Validated 84.6 1.9 4.8E-05 20.5 4.5 40 382-421 332-371 (371)
103 PRK07701 flgL flagellar hook-a 83.6 2.3 5.9E-05 19.9 4.6 39 381-421 263-301 (301)
104 PRK12717 flgL flagellar hook-a 80.0 2.7 6.9E-05 19.5 3.9 31 382-412 487-517 (523)
105 PRK12805 flagellin; Provisiona 78.1 3.9 0.0001 18.5 5.0 39 382-420 247-285 (287)
106 PRK08027 flgL flagellar hook-a 72.3 5.5 0.00014 17.5 4.5 39 381-421 279-317 (317)
107 PRK12803 flagellin; Provisiona 70.9 6 0.00015 17.3 4.5 40 382-421 296-335 (335)
108 PRK07192 flgL flagellar hook-a 65.0 7.8 0.0002 16.6 3.9 32 381-412 268-299 (305)
109 pfam08956 DUF1869 Domain of un 64.4 1.9 5E-05 20.4 0.1 33 381-421 14-46 (59)
110 PRK12687 flagellin; Reviewed 61.6 9 0.00023 16.2 5.3 40 382-421 272-311 (311)
111 PRK06663 flagellar hook-associ 61.5 9 0.00023 16.2 4.1 39 381-421 382-420 (420)
112 PRK08073 flgL flagellar hook-a 60.0 9.6 0.00025 16.0 3.9 32 381-412 250-281 (287)
113 TIGR00758 UDG_fam4 uracil-DNA 40.4 17 0.00043 14.4 1.7 13 409-421 50-62 (185)
114 PRK12808 flagellin; Provisiona 35.7 23 0.00059 13.6 4.7 40 382-421 421-460 (460)
115 KOG4128 consensus 35.6 23 0.00059 13.6 1.9 10 22-31 24-33 (457)
116 PRK12718 flgL flagellar hook-a 35.2 24 0.0006 13.5 3.8 38 382-421 473-510 (510)
117 pfam09392 MxiH Type III secret 34.3 24 0.00062 13.4 4.2 27 392-418 43-69 (69)
118 pfam10952 DUF2753 Protein of u 32.4 26 0.00067 13.2 2.9 36 385-420 14-49 (140)
119 PRK12806 flagellin; Provisiona 32.3 26 0.00067 13.2 4.6 38 382-419 435-472 (475)
120 pfam05299 Peptidase_M61 M61 gl 32.1 20 0.00051 14.0 1.0 42 4-45 50-92 (122)
121 TIGR02016 BchX chlorophyllide 30.0 23 0.00059 13.5 1.0 37 19-73 161-197 (355)
122 TIGR02105 III_needle type III 28.1 31 0.00079 12.8 3.9 35 384-418 30-71 (73)
123 PRK00253 fliE flagellar hook-b 26.5 33 0.00084 12.6 4.3 39 381-419 65-103 (105)
124 cd04143 Rhes_like Rhes_like su 23.9 10 0.00026 15.8 -1.7 22 399-420 149-170 (247)
125 cd04140 ARHI_like ARHI subfami 23.1 38 0.00097 12.2 1.6 24 398-421 142-165 (165)
126 KOG3633 consensus 22.8 38 0.00097 12.2 1.0 24 394-417 153-179 (219)
127 cd07231 Pat_SDP1-like Sugar-De 21.1 42 0.0011 11.9 1.2 10 26-35 7-16 (323)
No 1
>PRK05682 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=385.51 Aligned_cols=408 Identities=32% Similarity=0.508 Sum_probs=304.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC---CCCCCCCCCEEEEEEEEEECCCCEEEC
Q ss_conf 94458899999999999986378877530277867142200246543047---777631220588578863034111214
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS---TSNSYVSGGLEISTKDMISEQGSLMHT 77 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~---~~~~~~G~GV~v~~i~r~~~~~~~~~t 77 (421)
|| |++|.|||.|+|++|+|+||||||+||+||+|+++.|+++++.. ..+.++|.||++..+.+++.||.++.+
T Consensus 1 ms----l~tgvSGl~a~~~~l~visnNiAN~nT~GyK~~~~~F~~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qG~~~~T 76 (414)
T PRK05682 1 MS----FNTGVSGLNAASNDLDVIGNNIANANTTGFKESRAEFADLYANSSSSNSGSQVGLGVKTAGVAQQFTQGTITST 76 (414)
T ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCEEEC
T ss_conf 95----88999999999860167767787677530087755167865212567888743441785158876377785777
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 83022110366620101798825642011222123672014556201111101345554323445444444444554543
Q gi|254780525|r 78 ASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAM 157 (421)
Q Consensus 78 ~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (421)
++.+|+++.++++|... ..+...+++...|..+.+++|.+..+...+++..............................
T Consensus 77 ~~~~D~ai~G~GfF~v~-~~~~~~yTR~G~F~~d~~G~Lv~~~G~~l~G~~~d~~~~~~~~~~~~~l~~I~i~~~~~~~~ 155 (414)
T PRK05682 77 GNSLDLAISGNGFFVVS-SNGSVFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGGTPNGVQNANLVPLQIPTTALAPK 155 (414)
T ss_pred CCCCEEEECCCCEEEEC-CCCCEEEEECCCEEECCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 98321787377438864-89956888556188855881985999988704504788754433457744346047667864
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 33211233102455444444444456776543222103675406887367787621355554204776304444465666
Q gi|254780525|r 158 PTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPY 237 (421)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (421)
..+.......++..... ......+......+.+.....++|..|..+.+.+.+.+...+.|.................
T Consensus 156 ~Tt~~~~~~NL~~~~~~--~~~~~~~~~~~~~~~~~t~~~vyDs~G~~~~l~~~f~k~~~n~w~~~~~~~~~~~~~~~~~ 233 (414)
T PRK05682 156 ATTTVTFQGNLNSTAPV--PAVTPFDPTDADTYNKSTSVTVYDSLGNSHTLDVYFVKTGDNTWQVYVYDDGKAVDGPTTP 233 (414)
T ss_pred CCEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCC
T ss_conf 31057663014777756--6666667778765320345998868997489999999658980689997478765666554
Q ss_pred C--CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6--443210012202445644577653321246776655433233333100-2333343233444332344344554776
Q gi|254780525|r 238 N--VAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQ-LAGGFIPQKSEINGHAPGKPKDFSVSKD 314 (421)
Q Consensus 238 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (421)
. ........+.|+.. |.+........ ...........+.....+ .............+...|.+....++..
T Consensus 234 ~~~~~~~~~~~l~F~~~-G~l~~~~~~~~----~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~qdG~~~G~l~~~~i~~d 308 (414)
T PRK05682 234 TGTAGTTTAGTLTFDSN-GALTSFTIAIN----GGATPAGTLTLDLSGSTQQGTGFFNVSATTQDGYAPGTLTGVSIDDD 308 (414)
T ss_pred CCCCCCCCCCEEEECCC-CCCCCCCCCCC----CCCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 55556565421687688-72424666555----67787740687245640221466542211357722230466788899
Q ss_pred CEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Q ss_conf 33899841432110122200121786787741695266323358702137888761146523100047789999999999
Q gi|254780525|r 315 GYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIE 394 (421)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~ 394 (421)
|.+.+.+.++.......+.+.+|.||.+|.+.|++.|.++..||.+.++.++...+|.+.+++||+|+|||+|||++||.
T Consensus 309 G~i~a~~sNG~~~~l~qi~la~F~N~~gL~~~g~n~y~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~E~t~mI~ 388 (414)
T PRK05682 309 GTVVATYSNGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGAAGSGGFGTIQSGALESSNVDLTTELVDMIV 388 (414)
T ss_pred CEEEEEECCCCEEEEEEEEEEEECCHHHHHHHCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHCCCHHHHHHHHHH
T ss_conf 67999977995778768878862697897752497176411158753368998871248536405001779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999997512
Q gi|254780525|r 395 AQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 395 ~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
+||+||||||+|+|.|||||+|||||
T Consensus 389 ~QRaYqANskvItTsDemLq~linlK 414 (414)
T PRK05682 389 AQRNYQANAKTIKTQDQLLQTLVNLR 414 (414)
T ss_pred HHHHHHHHHEEEEEHHHHHHHHHHCC
T ss_conf 98774674034561999999997259
No 2
>PRK08425 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=374.05 Aligned_cols=137 Identities=28% Similarity=0.448 Sum_probs=127.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECC
Q ss_conf 00233334323344433234434455477633899841432110122200121786787741695266323358702137
Q gi|254780525|r 285 TQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGF 364 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~ 364 (421)
.++..........+.+...|.+....++..|.+.+.+.++.......+.+++|.||.||.+.|+++|.++..||.+.++.
T Consensus 580 tq~~~~s~~~~~~QdG~~~G~L~~vsI~~dG~I~g~ysNG~~~~l~qIaLA~F~N~~GL~~~G~Nlf~~T~~SG~~~~g~ 659 (716)
T PRK08425 580 TSVDKISTTYGIEQDGYTAGDLMDIRFDSDGVLLGAFSNGRTFALAQVALASFANNEGLQAEGGNVFSQTANSGEAVIGA 659 (716)
T ss_pred EECCCCCCCCEEECCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECC
T ss_conf 12155432100303883205677789899977999985995637789989885685772420696287502478866668
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 888761146523100047789999999999999999999999999999999975129
Q gi|254780525|r 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 365 ~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
++...+|+|..++||+|+|||-|||++||..||+||||||+|||.||||++||||||
T Consensus 660 ~g~~g~G~I~~~sLE~SNVDLs~Eft~mI~tQRgyQANsKvITTsDemLqelinLKR 716 (716)
T PRK08425 660 AGTGGRGSISASKLEMSNVDLSRSLTQLIVVQRGFQANSKTITTSDQMLNTLLQLKQ 716 (716)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHCCEEEEHHHHHHHHHHHCC
T ss_conf 886874227547623312159999999999766420304378618999999986469
No 3
>PRK06803 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=367.19 Aligned_cols=394 Identities=29% Similarity=0.474 Sum_probs=305.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECC-CCEEECCC
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034-11121483
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQ-GSLMHTAS 79 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~-~~~~~t~~ 79 (421)
|| |++|.|||.|+|.+|+|+||||||+||.||+|.++.|+++++... +.||++.+|.+.+.+ |.++.+++
T Consensus 1 mS----~~~gvSGl~a~~~~ldvIsNNIANvnT~GfK~s~~~F~dl~~~~~-----~gGv~~~~~~~~~~~~G~l~~T~~ 71 (398)
T PRK06803 1 MS----FNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFASIYNGGQ-----AGGVEVSSVSQNFSKGGSLTYTGR 71 (398)
T ss_pred CC----HHHHHHHHHHHHHCCHHHHHHHHHCCCHHCCCCCCCHHHHHCCCC-----CCCEEEEEEEEEEECCCCEEECCC
T ss_conf 96----899999999988564366357775785310756205467547667-----785487677777606887566698
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02211036662010179882564201122212367201455620111110134555432344544444444455454333
Q gi|254780525|r 80 NTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPT 159 (421)
Q Consensus 80 ~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (421)
.+|+|+.++++|......+...++|...|..+.+++|.+..+...+++.+.......... ................
T Consensus 72 ~~DlAI~G~GFF~V~~~~g~~~YTRaG~F~~D~~G~Lv~~~G~~l~G~~~d~~g~~~~~~----~~~i~i~~~~~~~~aT 147 (398)
T PRK06803 72 GLDLAISGGGFFVLKGSDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNIQTGN----VSDLQVQTASLPAKAT 147 (398)
T ss_pred CEEEEECCCCEEEEECCCCCEEEECCCEEEEEECCEEEECCCCEEECEEECCCCCCCCCC----CCCEEECCCCCCCCCC
T ss_conf 026998168679997699856675274189933787990899867453606888510266----3203401576686432
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 21123310245544444444445677654322210367540688736778762135555420477630444446566664
Q gi|254780525|r 160 TTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNV 239 (421)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (421)
+.......++.... .......+......+.......++|.+|..|.+..++.+...+.|............
T Consensus 148 t~~~~~~nl~a~~~--~~~~~~~~~~~~~~~~~~~~~~vyDs~G~~~~v~~~f~kt~~n~w~~~~~~~~~~~~------- 218 (398)
T PRK06803 148 DQLDFVANLDASVT--DPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVT------- 218 (398)
T ss_pred CEEEEEEECCCCCC--CCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCCCC-------
T ss_conf 20678862477666--676565688877630011128998468972578999996589716899975787557-------
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 4321001220244564457765332---1246776655433233333100233334323344433234434455477633
Q gi|254780525|r 240 APLNTVEVSFDPVTGYLANSSHKAI---SFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGY 316 (421)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (421)
....+.|+..... ........ ......+..+.....+....+++...........++...|.+....++..|.
T Consensus 219 ---~~~~l~F~~~G~l-~~~~~~~~~~~~~~~~~g~~~~~i~l~~~~~tq~~~~~~~~~~~qdG~~~G~l~~~~I~~dG~ 294 (398)
T PRK06803 219 ---PPLTLQFDDTGAL-IPGKGSTINLHDTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSDGYTSGELNGVRIEDNGM 294 (398)
T ss_pred ---CCEEEEECCCCCC-CCCCCCCEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCEECCCCCEEEEEEEEEEECCCCE
T ss_conf ---7447898788846-457764200144457787664358864776357436654100146875543232379888986
Q ss_pred EEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHH
Q ss_conf 89984143211012220012178678774169526632335870213788876114652310004778999999999999
Q gi|254780525|r 317 VDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQ 396 (421)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q 396 (421)
+.+.+.++.......+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+|+|||-+||++||..|
T Consensus 295 I~~~ysNG~~~~lgqIala~F~Np~gL~~~G~n~f~~T~~SG~~~~g~~g~~g~G~i~~gaLE~SNVDla~Eft~mI~tQ 374 (398)
T PRK06803 295 VYATYTNGQEQLQGQVVLANFANPNGLVTVSNTAWSASNKSGQAILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQ 374 (398)
T ss_pred EEEEECCCCEEEEEEEEEEEECCHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHCHHHHHHHHHHHHH
T ss_conf 99995487436776898997338365500479458643467886765799888512832746313140999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999997512
Q gi|254780525|r 397 RNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 397 ~aYqAsArvItt~demldtLlnl~ 420 (421)
|+||||+|+|+|.||||++|||||
T Consensus 375 R~yqANskvItT~DemlqelvN~v 398 (398)
T PRK06803 375 RNYQANAKVISTNDTMQQALFNAI 398 (398)
T ss_pred HHHHHHCEEEEEHHHHHHHHHHHC
T ss_conf 763564248874899999997409
No 4
>COG1749 FlgE Flagellar hook protein FlgE [Cell motility and secretion]
Probab=100.00 E-value=0 Score=357.65 Aligned_cols=412 Identities=36% Similarity=0.560 Sum_probs=315.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCC-C-CCEEEEEEEEEECCCCEEECCCH
Q ss_conf 458899999999999986378877530277867142200246543047777631-2-20588578863034111214830
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYV-S-GGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~-G-~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
|+++|.+|.|||.|||.+|+|+|+|||||||.||+|++++|+++.+.+..+... . .||.+..|.+++.||.+..|++.
T Consensus 1 m~~s~~~gvSGm~a~q~~LdvisnNIANanT~GfK~s~~~F~dm~s~s~~g~~~~~~~Gv~~s~i~~i~~qG~~~~T~~~ 80 (423)
T COG1749 1 MLRSFYNGVSGMNAHQFALDVISNNIANANTTGFKRSRAEFSDMFSQSLVGASTYTALGVGVSSISQIFTQGSFQSTGSN 80 (423)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCEEECCCC
T ss_conf 91677666666777664033202341345452113267506632010004554467667146645885158854764786
Q ss_pred HHHHHCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 221103666201017-988256420112221236720145562011111013455543234454444444445-545433
Q gi|254780525|r 81 TDLAIQGKGFFIVKG-RDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA-ELSAMP 158 (421)
Q Consensus 81 ~d~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (421)
+|+++.+.++|.... ..+..++++...|..+.+++|.+..+...+++.............. ......... ......
T Consensus 81 ~DlAI~G~GFF~v~~~~~~~~~yTRaG~F~~D~~g~LVn~~G~~l~G~~~~~~~~~~~~~~~--~~~i~i~~~~~~~a~~ 158 (423)
T COG1749 81 LDLAISGNGFFIVQDDSGGTNFYTRAGSFRLDKNGYLVNPAGLYLQGYPANGVTGGINGGTT--LLNIQIPNNNGLPAKA 158 (423)
T ss_pred CCEEEECCEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCC--CCCEECCCCCCCCCCC
T ss_conf 35799167179997168984588866750176788677688737973124688875114555--3321334566767643
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 32112331024554444444444567765432221036754068873677876213555542047763044444656666
Q gi|254780525|r 159 TTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYN 238 (421)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (421)
.+.......+.... ................+.......++|..|..+.+.+++.+.....|........... .+..
T Consensus 159 tt~~~~~~NL~~~~-~~~~~~~~~n~~~~~~~~~~~s~~~yDs~G~~~~~~~~f~k~~~~tw~v~~~~~~~~~---~p~g 234 (423)
T COG1749 159 TTNVSFSANLNSGA-IVPSITAPFNPTDTATYNYKTSLTVYDSLGNKHTLDVYFVKTGTNTWQVYVLVKSQTG---DPDG 234 (423)
T ss_pred CEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCCCCEEEEEEECCCCC---CCCC
T ss_conf 20652210148777-5653467878765321145315999926895123567999447871269999435666---8887
Q ss_pred CCCCC-CEEEEECCCCCCCCCCCCCCCCCC---CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 44321-001220244564457765332124---677665--543323333310023333432334-44332344344554
Q gi|254780525|r 239 VAPLN-TVEVSFDPVTGYLANSSHKAISFN---DNTSGI--DQQITIDISKTTQLAGGFIPQKSE-INGHAPGKPKDFSV 311 (421)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 311 (421)
..... ...+.|+.. |.+........... ....+. ............+........... .++...|......|
T Consensus 235 ~a~~~~~~~l~Fd~~-G~L~s~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~qdGy~~G~l~~~~I 313 (423)
T COG1749 235 TADTGTTFTLEFDPA-GALTSGEPGPTEIVGPNVAVNGATLAQGISLDLTGSTQQSTGFSLTVASTQDGYAPGNLKDYRI 313 (423)
T ss_pred CCCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCEEEEEECCCCCCEEEEEEEE
T ss_conf 666664257887798-8601278886434466656576300220453257754885130013456336755305778997
Q ss_pred CCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHH
Q ss_conf 77633899841432110122200121786787741695266323358702137888761146523100047789999999
Q gi|254780525|r 312 SKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTE 391 (421)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~n 391 (421)
+..|.+.+.+.++.......+.++.|.||.+|.+.|++.|.++..||++.++.++...+|.+..++||+|+|||-+|++|
T Consensus 314 ~~dG~I~~~ysNG~~~~~gqIaLa~F~N~~GL~~~ggN~~~~t~~SG~~~~g~~g~g~~G~i~~gaLE~SNVDls~Eltn 393 (423)
T COG1749 314 DEDGVIVGVYSNGVTQPLGQIALANFANPQGLVKEGGNVYAATNNSGAASLGAAGVGGFGKISSGALEMSNVDLAKELTN 393 (423)
T ss_pred CCCCEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCEEECCCCCEECCCHHHHHHHH
T ss_conf 79978999971882646667887730480106215895785115678614446887873025016332112118999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999999999975129
Q gi|254780525|r 392 LIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 392 Li~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
||..||+||||+|+|+|.|+||++||||||
T Consensus 394 mIvaQR~YqANsK~i~T~D~mlq~lvnLkr 423 (423)
T COG1749 394 LIVAQRGYQANAKVITTSDQMLQTLVNLKR 423 (423)
T ss_pred HHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
T ss_conf 888665044455068605899999986229
No 5
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=100.00 E-value=0 Score=348.41 Aligned_cols=419 Identities=22% Similarity=0.348 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------CCCCCCCCEEEEEEEEEECCCCE
Q ss_conf 4588999999999999863788775302778671422002465430477--------77631220588578863034111
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------SNSYVSGGLEISTKDMISEQGSL 74 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------~~~~~G~GV~v~~i~r~~~~~~~ 74 (421)
|+++|++|.|||.|||.+|+|+||||||+||.||+|.|+.|+++++... ...++|.||.+.++...+.||.+
T Consensus 1 m~~SlysGVSGL~a~~~~ldvIgNNIANvnT~GfK~sr~~F~dl~sq~~~~~~~~~~~~~~~g~Gv~~~~~~~~~~qGsl 80 (605)
T PRK05841 1 MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEY 80 (605)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCE
T ss_conf 91788899999999875442330243416762115553537876654304466777656753566587777887046664
Q ss_pred EECCCHHHHHHCCCCCCCCCCC-C-------------CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 2148302211036662010179-8-------------8256420112221236720145562011111013455543234
Q gi|254780525|r 75 MHTASNTDLAIQGKGFFIVKGR-D-------------NVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS 140 (421)
Q Consensus 75 ~~t~~~~d~a~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 140 (421)
+.+++.+|+|+.++++|..... . ...+++|...|..+.+++|.+..+...+++.+...........
T Consensus 81 ~~T~~~tDlAI~G~GFF~V~~~~~g~~~~~~~g~~~~~~~~YTRaG~F~~D~~G~LV~~~G~~vqG~~~~~~~~g~~~~~ 160 (605)
T PRK05841 81 MPSEGEFHMAYQGKGWFVIGPNKNGEFTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNST 160 (605)
T ss_pred EECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCC
T ss_conf 75698404898177179862278874111466556556624723777538999978879988797730465667743455
Q ss_pred C----------CCCCCCCC-CCCCCCCCCCCCEEEEECCCCCCCCCCC-----------------------CCCCCCCCC
Q ss_conf 4----------54444444-4455454333211233102455444444-----------------------444456776
Q gi|254780525|r 141 F----------QGLERINV-KHAELSAMPTTTGFISNNLDKNATIITP-----------------------DKTPKHNGR 186 (421)
Q Consensus 141 ~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 186 (421)
. ........ ..........+.......+......... .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~ip~~~~~~p~~Tt~v~~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (605)
T PRK05841 161 ARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPI 240 (605)
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66654321136753431546545458734317868675277655665531002576642222212445432235677755
Q ss_pred CCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEE-------------------------------CCCCCCCC-
Q ss_conf 5432221036754068873677876213555542047763-------------------------------04444465-
Q gi|254780525|r 187 DAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFR-------------------------------QDQSTNNS- 234 (421)
Q Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~- 234 (421)
...........+.+..+..+.+.+.+.............. ........
T Consensus 241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (605)
T PRK05841 241 DAITNRKLNISIQKENGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPI 320 (605)
T ss_pred CCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEECCHHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCE
T ss_conf 66444305688851588720279983366567663032021000001355641012114677776632575037875413
Q ss_pred ---------------------------------CCC-------CCCCCCC--EE--------------------------
Q ss_conf ---------------------------------666-------6443210--01--------------------------
Q gi|254780525|r 235 ---------------------------------FPY-------NVAPLNT--VE-------------------------- 246 (421)
Q Consensus 235 ---------------------------------~~~-------~~~~~~~--~~-------------------------- 246 (421)
.+. ....... ..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (605)
T PRK05841 321 TFSLSGGIADKLGLNANGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKNQTWEV 400 (605)
T ss_pred EEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 67504531000133566532355654454332344322433775168870465467887036886766643345541034
Q ss_pred --EEECCCCCCCCC-CCCCCCCCCCCCC---CCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --220244564457-7653321246776---65543323-------------3333100233334323344433234434
Q gi|254780525|r 247 --VSFDPVTGYLAN-SSHKAISFNDNTS---GIDQQITI-------------DISKTTQLAGGFIPQKSEINGHAPGKPK 307 (421)
Q Consensus 247 --~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
..+++....... .......+..... ........ ..................+++...|.+.
T Consensus 401 ~s~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~qdG~~~G~L~ 480 (605)
T PRK05841 401 KSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFR 480 (605)
T ss_pred EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEECCCCEEEECCCCCCEEEEE
T ss_conf 33320677753346763013430577776667753550478714651454545555314402320145336880036777
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCC---------CCCEEECCCCCCCC--EEEEEC
Q ss_conf 4554776338998414321101222001217867877416952663233---------58702137888761--146523
Q gi|254780525|r 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRD---------SGDISIGFPGHNQH--GEIFSG 376 (421)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~---------sg~~~~~~~~~~~~--~~i~~~ 376 (421)
...++..|.+.+.+.++.......+.+++|.||.||.+.|++.|.++.. ||.+.++.++.... |+|..+
T Consensus 481 ~~~Id~dG~I~g~ysNG~~~~l~qIalA~F~N~~GL~~~G~n~y~~T~~s~~~~~~~~SG~~~~g~~g~G~~~~GsI~~~ 560 (605)
T PRK05841 481 DMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHK 560 (605)
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEEEEEECCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEECCC
T ss_conf 78989994899998699687889998985368577232269556521255456665677873433577788764316247
Q ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 100047789999999999999999999999999999999975129
Q gi|254780525|r 377 ALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 377 ~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
+||+|+|||-+||++||..||+||||||+|+|.||||++||||||
T Consensus 561 aLE~SNVDLa~Eft~mIvtQR~yQANsKvITTsD~mLqelinLKR 605 (605)
T PRK05841 561 YLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK 605 (605)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHCEEEEEHHHHHHHHHHHCC
T ss_conf 620133058999999999876520541278768999999986259
No 6
>PRK12637 flgE flagellar hook protein FlgE; Provisional
Probab=100.00 E-value=0 Score=345.13 Aligned_cols=395 Identities=28% Similarity=0.435 Sum_probs=270.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHHHHC
Q ss_conf 99999999999986378877530277867142200246543047777631220588578863034111214830221103
Q gi|254780525|r 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDLAIQ 86 (421)
Q Consensus 7 l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~a~~ 86 (421)
|++|.|||.|+|.+|+|+||||||+||.||+|.++.|++++.. .++|.||++..|.+.+.||.++.+++.+|+|+.
T Consensus 3 ~~~GvsGl~a~~~~l~vi~nNiAN~~T~gfK~~~~~F~~~~~~----~~~g~g~~~~~~~~~~~~G~~~~t~~~~d~ai~ 78 (473)
T PRK12637 3 FGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYAS----SRVGLGVKVSAINQRFTVGNISTTGGEYDMAID 78 (473)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHCC----CCCCCCEEEEEEEEEECCCCEEECCCCCEEEEE
T ss_conf 7789999999885532551476737760008566716675455----876673476478988256780667983438894
Q ss_pred -CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf -6662010179882564201122212367201455620111110134555432344544444444455454333211233
Q gi|254780525|r 87 -GKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFIS 165 (421)
Q Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (421)
++++|......+..+++|...|..+.+++|.+..+...+++................ ..+.........+.
T Consensus 79 ~g~GfF~v~~~~~~~~yTR~G~F~~d~~g~lv~~~G~~lqG~~~~~~g~~~~~i~l~~--------~~~~p~aTt~~~~~ 150 (473)
T PRK12637 79 GGKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQ--------GNIAPQATSTAGLQ 150 (473)
T ss_pred CCCEEEEEECCCCCEEEECCCCEEECCCCEEECCCCCEEECCCCCCCCCCEEEEECCC--------CCCCCCCCEEEEEE
T ss_conf 6970799973899667743642668799709858998877644677887401135467--------77587432058788
Q ss_pred ECCCCCCCCCC-------------------------------------------------------------------CC
Q ss_conf 10245544444-------------------------------------------------------------------44
Q gi|254780525|r 166 NNLDKNATIIT-------------------------------------------------------------------PD 178 (421)
Q Consensus 166 ~~~~~~~~~~~-------------------------------------------------------------------~~ 178 (421)
..+........ ..
T Consensus 151 ~NL~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 230 (473)
T PRK12637 151 TNLNANAKVIDPNDTPAVDGTVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLASQPGYQPYKPLVA 230 (473)
T ss_pred EECCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 84067764447766645465010145125762367602220123335643455202205520133235666544332123
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC----CEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 44456776543222103675406887367787621355554----20477630444446566664432100122024456
Q gi|254780525|r 179 KTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKK----WEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTG 254 (421)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (421)
....+......+.......+++..|..+.+...+.+..... +......... +..........+.|+....
T Consensus 231 ~~~~d~t~~~~~~~~~~~~v~ds~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~------~~~~~~~~~~tl~fd~~g~ 304 (473)
T PRK12637 231 GIPFDPTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQ------PMQVNGGASQTLNFDTAGN 304 (473)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCC------CCCCCCCCCEEEEECCCCC
T ss_conf 5656877775313443069882689825789998614677877436899953787------3123577630588658885
Q ss_pred CCCCCCCCCCCCC-CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 4457765332124-6776---65543323333310023333432334443323443445547763389984143211012
Q gi|254780525|r 255 YLANSSHKAISFN-DNTS---GIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIY 330 (421)
Q Consensus 255 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (421)
............. .... .............+++..... ....+++...|.+....++..|.+.+.+.++......
T Consensus 305 l~~~~~~~~~t~~~~~~~~~~~~~~~it~~~~g~Tq~~s~~~-~~~~qdG~~~G~L~~~~Id~dG~I~g~ySNG~t~~l~ 383 (473)
T PRK12637 305 LLNQPPTAQVTFANPGGNAAPADPLAITVSYNGVTQYGSDFA-PKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIG 383 (473)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEEECCCCEEEECCCCC-CEECCCCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 147887421576257877676776048872665167546665-1230278445415688989994899998799598988
Q ss_pred CCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22001217867877416952663233587021378887611465231000477899999999999999999999999999
Q gi|254780525|r 331 RLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGS 410 (421)
Q Consensus 331 ~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~d 410 (421)
.+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+|+|||-+||++||..||+||||+|+|+|.|
T Consensus 384 qIaLA~F~Np~GL~~~G~n~y~~T~~SG~~~~g~ag~gg~G~I~~gaLE~SNVDLa~Eft~mIvtQR~yQANSKvItTsD 463 (473)
T PRK12637 384 TLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQD 463 (473)
T ss_pred EEEEEEECCHHHCEECCCCEEECCCCCCCCEECCCCCCCCCEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHH
T ss_conf 99999616958660137963872013788557579988862172175402440799999999998765014325887589
Q ss_pred HHHHHHHHHC
Q ss_conf 9999997512
Q gi|254780525|r 411 DFMDILISLK 420 (421)
Q Consensus 411 emldtLlnl~ 420 (421)
|||++|||||
T Consensus 464 emLqelinLK 473 (473)
T PRK12637 464 EVMQVLMNMR 473 (473)
T ss_pred HHHHHHHHCC
T ss_conf 9999997059
No 7
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=100.00 E-value=0 Score=315.27 Aligned_cols=243 Identities=32% Similarity=0.509 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC---------------CCCCCCCEEEEEEEEEEC
Q ss_conf 89999999999998637887753027786714220024654304777---------------763122058857886303
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS---------------NSYVSGGLEISTKDMISE 70 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~---------------~~~~G~GV~v~~i~r~~~ 70 (421)
+|++|..||.|+|..|+|+||||||+||.||+|+|++|.++.|.... +.++|.||++.+++|+|.
T Consensus 1 aL~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA~FEDL~YQ~~r~pG~q~~~~~t~~P~G~~~G~GVr~~at~k~~~ 80 (263)
T TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTVRQPGAQSSEQQTILPVGVQVGLGVRVVATQKLFT 80 (263)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCEEECCCEEEEEEEEEEE
T ss_conf 93033655888735788877633110234412123676557477312588887776300346624358504235766641
Q ss_pred CCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4111214830221103666201017988256420112221236720145---5620111110134555432344544444
Q gi|254780525|r 71 QGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENV---AGGVLLGYPLKNASAPLIVNSFQGLERI 147 (421)
Q Consensus 71 ~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (421)
||.++.|++.+|+|+.++|||+...++|...|+|...|..+.++.|.+. .+.....
T Consensus 81 QG~lq~TgN~LDlAI~G~GFFQv~~pDG~~~YTR~G~F~~n~~G~lVt~~aq~Gy~l~P--------------------- 139 (263)
T TIGR02488 81 QGSLQNTGNDLDLAIEGEGFFQVLLPDGTTAYTRDGAFKLNAEGQLVTSSAQDGYPLQP--------------------- 139 (263)
T ss_pred CCCEECCCCCCCEEEECCCEEEEECCCCCEEECCCCCCCCCCCCCEECCCCCCCCEECC---------------------
T ss_conf 67201058760047864833898669987610124674608995276443468965366---------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEC
Q ss_conf 44445545433321123310245544444444445677654322210367540688736778762135555420477630
Q gi|254780525|r 148 NVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQ 227 (421)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 227 (421)
.
T Consensus 140 ------------------------------~------------------------------------------------- 140 (263)
T TIGR02488 140 ------------------------------E------------------------------------------------- 140 (263)
T ss_pred ------------------------------E-------------------------------------------------
T ss_conf ------------------------------2-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44444656666443210012202445644577653321246776655433233333100233334323344433234434
Q gi|254780525|r 228 DQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPK 307 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (421)
...+....
T Consensus 141 ------------------------------------------------------------------------ItiP~~A~ 148 (263)
T TIGR02488 141 ------------------------------------------------------------------------ITIPENAT 148 (263)
T ss_pred ------------------------------------------------------------------------EECCCCCC
T ss_conf ------------------------------------------------------------------------47188870
Q ss_pred C-CCCCCCCEEEEEECCCCC-CCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCH
Q ss_conf 4-554776338998414321-10122200121786787741695266323358702137888761146523100047789
Q gi|254780525|r 308 D-FSVSKDGYVDIIYDDGTR-VPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDI 385 (421)
Q Consensus 308 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnl 385 (421)
. +.+..+|.+......... .....+.+++|-||+||.+.|.|+|..+.+||.+..+.++...+|.|.|+.||+|||++
T Consensus 149 ~ni~v~~dG~VsV~~~~~~~~~~~GQi~la~FiNPAGL~a~G~NLf~eT~ASG~p~~g~Pg~~G~G~l~QG~LE~SNV~v 228 (263)
T TIGR02488 149 SNITVGSDGEVSVRQGGQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGDPIVGTPGLDGFGKLKQGFLEASNVNV 228 (263)
T ss_pred EEEEECCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCCH
T ss_conf 10698678789998378972000101011210154347734564101578868876888888873388816163026744
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999997512
Q gi|254780525|r 386 ASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 386 DEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
=|||+|||.=||||+.|||+|++.||||+++=+++
T Consensus 229 V~EmvdmI~aQRAYE~NSK~i~asD~Mlq~~~~~~ 263 (263)
T TIGR02488 229 VQEMVDMITAQRAYEMNSKVIQASDQMLQTVSQLL 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56664233688898775388887999999996129
No 8
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=326.64 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=71.2
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 94-45889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 1 MG-ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 1 MS-l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
|+ +|++|+||+|||.|+|++|+||||||||||||||+||+|++.+..+...+++++|+||+|.+|+|++|++...+
T Consensus 1 M~s~fs~Lnia~sGL~a~Q~aL~vtg~NIANanT~GYsRQ~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~q 77 (612)
T PRK08471 1 MGGIFSSLNTGYTGLQAHQVQVSVTGNNISNASSEFYTRQRVVQTAQTALNTGPGNVGTGTQIETIVRIHDEFVYSR 77 (612)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHH
T ss_conf 97056589999999999999999986767407899815016774044661257886556779766987035799999
No 9
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=331.32 Aligned_cols=193 Identities=18% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034111214830
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
|||+++|+||+|||.|+|++|+||||||||||||||+||++++++. +.||++.+|+|++|++...+....
T Consensus 1 Msl~s~lnia~sgL~a~Q~al~vtg~NIANanT~GYsRQ~v~~~~~----------~~Gv~v~~I~R~~d~fl~~q~r~~ 70 (482)
T PRK07521 1 MSLSSALNTAQSGLTATSRQTSVVSRNIANALTPGYSRRTASLVSG----------PYGGQVVGISRAQDEALLAQYLLA 70 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC----------CCCEEEEEEEEEHHHHHHHHHHHH
T ss_conf 9767899999999999999999885635307998824137787744----------898578779981148999999999
Q ss_pred H----------HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2----------211036662010179882564201122212367201455620111110134555432344544444444
Q gi|254780525|r 81 T----------DLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVK 150 (421)
Q Consensus 81 ~----------d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (421)
. +.....+..+..+... .........|+..+......|.+...+...+.....................
T Consensus 71 ~s~~~~~~~~~~~l~~le~~~~e~~~~-~~l~~~l~~F~~a~q~ls~~P~~~~~r~~v~~~a~~L~~~~n~~~~~L~~~~ 149 (482)
T PRK07521 71 TSAAAAQDTLASGLERLASAVGDTDYE-GSPSARLSDFQAALQTAASSPDNTTLAQAAVDAAQDLANSLNDASDAVQSAR 149 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877789999999999999983899888-7578999999999999861988789999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 455454333211233102455444444444456776543222103675406887
Q gi|254780525|r 151 HAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGS 204 (421)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 204 (421)
.....+....+.+++..+.++..++..+......+.......+.+..+.+.+..
T Consensus 150 ~~~~~~i~~~V~~iN~l~~~Ia~LN~qI~~~~~~g~~~ndLlDqRD~ll~eLS~ 203 (482)
T PRK07521 150 ADADAEIATSVDTLNTLLAQFEDANNAIVSGTATGRDASDLLDQRDALLKQISQ 203 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999995247899947889999999999985
No 10
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=331.87 Aligned_cols=205 Identities=16% Similarity=0.082 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034111214830
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
||| |+||+|||.|+|++|+||||||||||||||+||++++++.++...+++++|+||+|.+|+|++|++...+....
T Consensus 1 m~~---ln~a~SgL~a~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R~~D~~l~~~~~~~ 77 (456)
T PRK07191 1 MNF---IRTAFSGMQAAQAHLNATSMNIANMHTPGYSRQGVEQSAIGADGQGGVNAGNGVNVDGIRRLSQQYVVMQEWQA 77 (456)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 975---78999999999999999988574389989150366764235777788755677798378870518999999999
Q ss_pred H----------HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2----------211036662010179882564201122212367201455620111110134555432344544444444
Q gi|254780525|r 81 T----------DLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVK 150 (421)
Q Consensus 81 ~----------d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (421)
. +.....+..+.. .+.........|+..+.....+|.....+...+.....................
T Consensus 78 ~s~~~~~~~~~~~l~~le~~~~~---~~~~l~~~l~~f~~a~~~la~~P~~~~~r~~v~~~a~~l~~~~n~~~~~l~~~~ 154 (456)
T PRK07191 78 NSQQGYYDAGEQYFNALELVVGN---KSTSLATGLNNFFSALSAATQLPDSPPMRQQVIESANAMALRFNNVNNFIVQQK 154 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88989999999999999986078---998579999999999999984989889999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 4554543332112331024554444444444567765432221036754068873677876
Q gi|254780525|r 151 HAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVY 211 (421)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 211 (421)
.....+....+.+++..+.++..++..+......+.......+.+..+.+.+...+.+.+.
T Consensus 155 ~~~~~~i~~~V~~iN~ll~qIa~LN~~I~~~~~~g~~~ndL~DqRD~ll~eLS~~i~i~v~ 215 (456)
T PRK07191 155 KSIGQQRDATVKQINSLTRSIADYNQKILKNRSDGNNISDLLDQRDLQIKKLSGLIEVRVV 215 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 9999999999999999999999999999973068998167899999999998752282899
No 11
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=329.55 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC-------CCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 94458899999999999986378877530277867142200246543047-------77763122058857886303411
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS-------TSNSYVSGGLEISTKDMISEQGS 73 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~-------~~~~~~G~GV~v~~i~r~~~~~~ 73 (421)
.|||++|+||+|||.|+|++|+||||||||||||||+||+|+|++.++.. .+++++|.||+|.+|+|++|++.
T Consensus 2 ~s~f~~Lnia~SGL~a~Q~~l~vt~~NIANanT~GYsRq~v~~~~~~~~~~~g~~~~~~~gq~G~GV~v~~V~R~~d~~l 81 (500)
T PRK07739 2 PSTFMGLETARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLAATPPYPTVSRNDPKGPGQMGTGVEAGSIERIRDQFL 81 (500)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHH
T ss_conf 84053599999999999999999977573279998052056764346755666556667775436768745888305899
Q ss_pred EE
Q ss_conf 12
Q gi|254780525|r 74 LM 75 (421)
Q Consensus 74 ~~ 75 (421)
..
T Consensus 82 ~~ 83 (500)
T PRK07739 82 DN 83 (500)
T ss_pred HH
T ss_conf 99
No 12
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=316.59 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=66.9
Q ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC-------CCCCCCCCCCEEEEEEEEEECCC
Q ss_conf 94-45889999999999998637887753027786714220024654304-------77776312205885788630341
Q gi|254780525|r 1 MG-ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP-------STSNSYVSGGLEISTKDMISEQG 72 (421)
Q Consensus 1 MS-l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~-------~~~~~~~G~GV~v~~i~r~~~~~ 72 (421)
|. +|.+|+||+|||.|+|++|+||||||||||||||+||+|++++..|. ...++++|+||+|.+|+|+||++
T Consensus 1 M~s~F~~L~ig~sgL~a~Q~aL~ttg~NIANvnT~GYsRQ~v~~~a~~p~~~~~~~~~~~~G~~G~GV~v~~I~R~~D~f 80 (628)
T PRK06665 1 MDSTFSGIEIGKRSLFAHKQAMQTTGHNISNASKPGYSRQRVTMKTEDPLYAPQLNRANKPGQIGQGVTIQSIERVRDEL 80 (628)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHH
T ss_conf 98524269999999999999999885766417998805217664123664456545455678767888972798715189
Q ss_pred CEEE
Q ss_conf 1121
Q gi|254780525|r 73 SLMH 76 (421)
Q Consensus 73 ~~~~ 76 (421)
...+
T Consensus 81 l~~q 84 (628)
T PRK06665 81 LDDR 84 (628)
T ss_pred HHHH
T ss_conf 9999
No 13
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=314.27 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCC---
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483---
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTAS--- 79 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~--- 79 (421)
|.++|+||+|||+|+|++|+||||||||||||||+||+|++.+..+...+++++|+||+|.+|+|++|++...+...
T Consensus 1 lss~l~ia~sgL~a~Q~al~vt~~NIaNanT~GYsRq~v~~~~~~~~~~~~g~~G~GV~v~~I~R~~D~fl~~~~r~~~s 80 (547)
T PRK08147 1 MSSLINTAMSGLNAAQAALNTVSNNISNYNVAGYTRQTTILAQAGSTLTAGGWIGNGVYVSGVQREYDAFITNQLRAAQT 80 (547)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 96189999999999999999997756338999806305775224665567874257879806988152899999999987
Q ss_pred -------HHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------0221103666201017988256420112221236720145562011111013455543234454444444445
Q gi|254780525|r 80 -------NTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA 152 (421)
Q Consensus 80 -------~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (421)
..+.....+..+... +.........|+..+.....+|.....+...+..+....................
T Consensus 81 ~~~~~~~~~~~l~~le~~f~e~---~~gl~~~l~~f~~a~~~ls~~P~~~~~r~~vi~~A~~La~~~n~~~~~L~~~~~~ 157 (547)
T PRK08147 81 QSSGLTTRYEQMSKIDNLLSDS---TNSLSTTLQDFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKG 157 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7779999999999999872888---8757899999999999998688988999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 545433321123310245544444
Q gi|254780525|r 153 ELSAMPTTTGFISNNLDKNATIIT 176 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~ 176 (421)
...+....+.+++..+.++..++.
T Consensus 158 ~~~~i~~~V~~iN~ll~~Ia~LN~ 181 (547)
T PRK08147 158 VNIAIGTSVDQINNYAKQIASLND 181 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 14
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK; InterPro: IPR002371 Within the bacterial flagellum, the basal-body rod, the hook, the hook- associated proteins (HAPs), and the helical filament together constitute an axial substructure whose elements share structural features and a common export pathway . The amino acid sequences of the hook protein and of the three hook-associated proteins of Salmonella typhimurium have been deduced from the DNA sequences of their structural genes (flgE, flgK, flgL and fliD respectively). These sequences have been compared with each other and with those for the filament protein (flagellin) and four rod proteins. The hook protein was found to be most similar to the distal rod protein (FlgG) and the proximal hook-associated protein (HAP1), which are thought to be attached to the proximal and distal ends of the hook, the similarities being most pronounced near the N- and C-termini. It is thought that the axial proteins may adopt amphipathic alpha-helical conformations at their N- and C-termini. These regions of the filament and hook are believed to be responsible for quaternary interactions between subunits. Interaction between N- and C-terminal alpha-helices may be important in the formation of the axial structures of the flagellum. Although consensus sequences have been noted, no consensus extends to the entire set of axial proteins. Thus the basis for recognition of a protein for export by the flagellum-specific pathway remains to be identified.; GO: 0005198 structural molecule activity, 0009296 flagellum biogenesis, 0009424 flagellin-based flagellum hook.
Probab=100.00 E-value=0 Score=326.38 Aligned_cols=214 Identities=16% Similarity=0.124 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC------CCCCCCCCEEEEEEEEEECCCCEEECC
Q ss_conf 88999999999999863788775302778671422002465430477------776312205885788630341112148
Q gi|254780525|r 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST------SNSYVSGGLEISTKDMISEQGSLMHTA 78 (421)
Q Consensus 5 ~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~------~~~~~G~GV~v~~i~r~~~~~~~~~t~ 78 (421)
.+|+||++||.|+|.+|+||||||||||||||+||+|++++.++... ++.++|+||+|.+|+|++|++.+.+..
T Consensus 1 ~~l~~a~~gL~a~q~al~~~~~NIANant~GY~Rq~a~~~~~~~~~~~~~~~~~~~~~G~GV~v~~i~R~~d~~l~~q~~ 80 (495)
T TIGR02492 1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAELTASPAGGQGLNATEGGLQIGTGVKVTSIRRIQDQFLDNQLR 80 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHH
T ss_conf 94789999999999999987436224679896046677503334321110001466555646986554415489999998
Q ss_pred C-----------HHHHHHCCCCCCCCCCCCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 3-----------02211036662010179882-56420112221236720145562011111013455543234454444
Q gi|254780525|r 79 S-----------NTDLAIQGKGFFIVKGRDNV-NCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLER 146 (421)
Q Consensus 79 ~-----------~~d~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (421)
. ..+.....+..+......+. ........|+..+.....+|.....+...+.................
T Consensus 81 ~~~s~~~~~~~~~~~~l~~~e~~~~~~~~~~~~sl~~~L~~Ff~al~~l~~~P~~~~~r~~~~~~~~~la~~~n~~~~~L 160 (495)
T TIGR02492 81 RANSSAGGYADSRASSLSKIEQIFNDTDESGLGSLSTDLNNFFNALQELAKNPDSEALRQAVLESAQALANQFNQTSSEL 160 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87755678999999999999986168887754462889989999999997087887899999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 444445545433321123310245544444444445---677654322210367540688736778762135555
Q gi|254780525|r 147 INVKHAELSAMPTTTGFISNNLDKNATIITPDKTPK---HNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDK 218 (421)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 218 (421)
...+.....+....+.+++..+.++..++..+.... ..+.......+.|..+...+...+.+.+........
T Consensus 161 ~~~~~~~~~~i~~~V~~iN~l~~~ia~~N~~I~~~~g~~~~g~~andL~DqRD~ll~~Ls~~~~i~~~~~~~G~~ 235 (495)
T TIGR02492 161 TDLQKNINAEIKSAVTEINSLLKQIASLNKEIQQVEGGKASGQDANDLLDQRDLLLKELSQLIGISVSENEDGTV 235 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCE
T ss_conf 999975655788999999999999998768864002787787776778744999999988672603788268856
No 15
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=100.00 E-value=4.2e-45 Score=305.18 Aligned_cols=73 Identities=29% Similarity=0.444 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 9445889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
||| |+||+|||.|+|++|+||||||||||||||+||++++.+.++...+++++|+||+|.+|+|++|++...+
T Consensus 1 ~sl---lnig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~ 73 (649)
T PRK12715 1 MSI---LNIAYSGLNAFQRALDVTGNNIANFKTRGYSRQSIQFTPIASNRYAGSYIGAGVSVSSIYRNVDQFANAQ 73 (649)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
T ss_conf 976---8899999999999998870525526899804146664224676667873106889757998463899999
No 16
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=100.00 E-value=0 Score=310.10 Aligned_cols=73 Identities=29% Similarity=0.450 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 9445889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
||| |+||+|||.|+|++|+||||||||||||||+||++++++..+...+.+++|+||+|.+|+|++|++...+
T Consensus 1 msl---l~ig~sgL~a~Q~al~vt~~NIAN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~D~fl~~~ 73 (624)
T PRK12714 1 MSI---MSTGTSALIAFQRALSTVSHNVANINTEGYSRQRVEFATRTPTDMGYAFVGNGAKITDVGRVADQLAISR 73 (624)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
T ss_conf 971---7899999999999999884756516899803127787513675567864105789737998261899999
No 17
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=0 Score=324.54 Aligned_cols=132 Identities=14% Similarity=0.166 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC--CCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 458899999999999986378877530277867142200246543047--777631220588578863034111214830
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS--TSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~--~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
+|++||||+|||.|+|++|+||||||||||||||+||++++++++... .++..+|.||+|.+|+|++|++...+....
T Consensus 2 ~~S~~n~a~SGl~A~q~al~vts~NIANanT~GYsRq~v~~~~~~~~~~~~~~~~~G~GV~v~~v~R~~d~~l~~~~~~~ 81 (431)
T PRK06799 2 RLSDYNTPLSGMLAAQMGLQTTQQNLSNIHTPGYVRQMVNYGSVGASGGLLPEQRIGYGVQTLGVDRITDEVKTKQYNDQ 81 (431)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 64245699999999999999887857407998906147220134678777777755578898068871508999999999
Q ss_pred H----------HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2----------2110366620101798825642011222123672014556201111101345554
Q gi|254780525|r 81 T----------DLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPL 136 (421)
Q Consensus 81 ~----------d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 136 (421)
. ......+..+...... ........|+..+.....+|.....+...+.......
T Consensus 82 ~s~~~~~~~~~~~l~~~e~~~~~~~~~--~ls~~l~~ff~a~~~la~~P~~~~~r~~v~~~a~~la 145 (431)
T PRK06799 82 LSQLSYYNYMNSALSRVESMVGTTGKN--SLSSLMDGFFNAFREVAKNPEQANYYDTLISETGKFT 145 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999889999999999999984898888--5789999999999999859687789999999999999
No 18
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=100.00 E-value=0 Score=312.27 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCH
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863034111214830
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASN 80 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~ 80 (421)
||||++|+||+|||+|+|.+|+||||||||+|||||+||||++.+..+...++..+|+||.|.+|+|++|++...+....
T Consensus 1 ms~~s~lnta~sgl~a~q~~l~vtg~NIsNant~gYsRQrv~~~~~~~~~~~~~~~G~Gv~V~sI~R~~d~fl~~q~~~a 80 (552)
T COG1256 1 MSLFSLLNTALSGLNAAQAALDVTGHNISNANTPGYSRQRVIQTTNIPYLGGGLNVGTGVNVVSIQRLRDEFLTNQYRNA 80 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHH
T ss_conf 95267799999999999999987561335689998630210432356643576666676488863116879999999988
Q ss_pred HHH----------HHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221----------1036662010179882564201122212367201455620111110134555432344544444444
Q gi|254780525|r 81 TDL----------AIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVK 150 (421)
Q Consensus 81 ~d~----------a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (421)
... ....+..+.... .....+....|+..++.+...+.....+...+.....................
T Consensus 81 ~s~~s~~~t~~~~L~~le~ll~~~~--~~sl~~~L~~ff~s~q~la~~P~~~a~r~~vl~~a~~l~~~in~~~~~L~~l~ 158 (552)
T COG1256 81 NSQSSYLDTRASQLSQLESLLSEPS--ESSLSTLLNDFFNSLQELASNPSDTAARQAVLSKAQTLVNQINNTYEQLTDLR 158 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7666689999999999999847976--35378999999999999985956478999999999999999989999999999
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 45545433321123310245544444444445677654322210367540688736778762
Q gi|254780525|r 151 HAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYY 212 (421)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (421)
.....+....+.+++..+.++..++..+......+..+....+.+..+.+.+...+.+.+..
T Consensus 159 ~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~~~~g~~~NdLlDqRD~Lv~eLs~~i~i~V~~ 220 (552)
T COG1256 159 KDINAEIAATVDEVNSLLKQIADLNKQIRKVKAAGNDPNDLLDQRDQLVDELSQLIGISVSK 220 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 88868999999999999999999999999730479993067777999999997462559998
No 19
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=100.00 E-value=7.1e-43 Score=290.86 Aligned_cols=230 Identities=25% Similarity=0.378 Sum_probs=188.5
Q ss_pred CCCEEEEEEECCCCEEEEEEEECCC-----CCCCCEEEEEECCCCCCC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 2210367540688736778762135-----555420477630444446-5666644321001220244564457765332
Q gi|254780525|r 191 THKSSFAAYDTLGSSVVYDVYYTKT-----GDKKWEVSIFRQDQSTNN-SFPYNVAPLNTVEVSFDPVTGYLANSSHKAI 264 (421)
Q Consensus 191 ~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (421)
.+....++.|++|.+|++.+.+.+. ....|...+...+++... ..-............|.. .|.+.+.....+
T Consensus 633 ~h~a~~dIvDSLGsKHtl~v~F~K~sttqDG~~eW~f~~~VPEPA~f~~gsge~p~~fegGra~Fn~-DGsL~g~nPpti 711 (877)
T TIGR02489 633 AHSAGLDIVDSLGSKHTLEVEFVKQSTTQDGDNEWSFIIRVPEPAEFVNGSGEKPNIFEGGRARFNE-DGSLAGMNPPTI 711 (877)
T ss_pred HHCCCEEEEECCCCEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEECCCCCCCCCEECCCEEEECC-CCCCCCCCCCCE
T ss_conf 2124303654388802479999986402568850489998489851525634765162364188788-766476888621
Q ss_pred CCCCCCCCCCCCCCC-CCC------CCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCEEC
Q ss_conf 124677665543323-333------31002333343233444332344344--554776338998414321101222001
Q gi|254780525|r 265 SFNDNTSGIDQQITI-DIS------KTTQLAGGFIPQKSEINGHAPGKPKD--FSVSKDGYVDIIYDDGTRVPIYRLAIA 335 (421)
Q Consensus 265 ~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (421)
.+.+..+....+... .+. +.......+........++..|.+.+ +++|..|...+.+.++.....+.++++
T Consensus 712 ~F~PknGa~~pQri~L~FG~sgtf~GL~S~dk~S~~~~~~~nGY~sG~L~dDaiR~D~~G~LlGeFsNGk~~alA~vA~A 791 (877)
T TIGR02489 712 QFDPKNGAASPQRIELSFGTSGTFDGLTSSDKASTTTGIAQNGYQSGNLKDDAIRFDSNGNLLGEFSNGKTLALAQVALA 791 (877)
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 21777887788406775276542687312133100125133661357877550787378747553038603687788877
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21786787741695266323358702137888761146523100047789999999999999999999999999999999
Q gi|254780525|r 336 TVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDI 415 (421)
Q Consensus 336 ~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldt 415 (421)
.|.|..||...|+|+|..+..||.+.+|.+++..+|.+..++||||+|||---|+.||.+||.||||+|.|||.|+||+|
T Consensus 792 s~aNN~GL~a~GgNlf~~TaNSGepvVG~AgtGgRG~~~~SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~T 871 (877)
T TIGR02489 792 SFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEVSTSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNT 871 (877)
T ss_pred HHCCCCCHHHHCCCEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHH
T ss_conf 30054330212671154313438820632588887860445210010046664301277651411456403015789999
Q ss_pred HHHHCC
Q ss_conf 975129
Q gi|254780525|r 416 LISLKR 421 (421)
Q Consensus 416 Llnl~R 421 (421)
||+||-
T Consensus 872 LlqLKQ 877 (877)
T TIGR02489 872 LLQLKQ 877 (877)
T ss_pred HHHHCC
T ss_conf 974059
No 20
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=2.8e-45 Score=306.57 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 9445889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
|+ ++.|+||+|||.|+|++|+||||||||||||||+||+|++++..+...+++++|+||+|.+|+|++|++...+
T Consensus 1 m~-s~ll~ig~sgL~a~Q~al~vtg~NIANanT~GYsRq~v~~~~~~~~~~~~~~~G~GV~v~~I~R~~D~fl~~q 75 (626)
T PRK08871 1 MA-SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNDPRQFGGSTYGMGVHVENVRRSWDQFAVNE 75 (626)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHH
T ss_conf 95-6789999999999999999874766516998805105654045762347872036789837998152799999
No 21
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=3.4e-44 Score=299.36 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 5889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
.+.|+||+|||.|+|++|+||||||||||||||+||+|++.+.++...+++++|+||++.+|+|++|++...+
T Consensus 2 ssll~ig~sgL~a~Q~~l~vtg~NIaN~nT~GYsRq~v~~~~~~~~~~~~g~~G~Gv~v~~I~R~~D~fl~~~ 74 (649)
T PRK06945 2 SSLFNIGVSGLNAAQWGLTTTGHNISNAATPGYSRQRPVQAEASGQYTGSGYLGQGVNTVTVKRQYNQYLSAQ 74 (649)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHH
T ss_conf 5078999999999999999885756517898804016663045774557875457779836998042899999
No 22
>PRK12636 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=9.9e-40 Score=270.83 Aligned_cols=250 Identities=36% Similarity=0.583 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC-------------CCCCCCCCCEEEEEEEEEE
Q ss_conf 458899999999999986378877530277867142200246543047-------------7776312205885788630
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS-------------TSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~-------------~~~~~~G~GV~v~~i~r~~ 69 (421)
|..+|++|.|||.+.|+.|++++|||||+|||||+|+++.|++.++.. .....+|.|+.+..+...+
T Consensus 1 M~r~lYta~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~ 80 (263)
T PRK12636 1 MLRSMYSGISGMKNFQTKLDVIGNNIANVNTVGYKKSRVTFKDMVSQTISGASGPTANRGGVNSKQVGLGSTLGSIDTIH 80 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEEEEEEEC
T ss_conf 96589999999999999788998999877765448472318999887631467766566776651230212542467542
Q ss_pred CCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34111214830221103666201017988256420112221236720145562011111013455543234454444444
Q gi|254780525|r 70 EQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINV 149 (421)
Q Consensus 70 ~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (421)
.||.++.|++.+|+|+.++++|....+. ...+++...|..+.++.|.+..+.......
T Consensus 81 ~qG~l~~Tg~~lDlAI~G~GfF~V~~~~-g~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~--------------------- 138 (263)
T PRK12636 81 TQGSLQTTGRPLDLAISGDGYFRVGSGD-ETYYTRAGNFYLDNEGNLVNADGLYLLGMN--------------------- 138 (263)
T ss_pred CCCCEEECCCCCEEEECCCCEEEECCCC-CEEEEEECCEEECCCCCEECCCCCEEECCC---------------------
T ss_conf 7877143698211898588778874999-747997045889899888869999806899---------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCC
Q ss_conf 44554543332112331024554444444444567765432221036754068873677876213555542047763044
Q gi|254780525|r 150 KHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQ 229 (421)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (421)
|..+.+
T Consensus 139 -----------------------------------------------------g~pI~i--------------------- 144 (263)
T PRK12636 139 -----------------------------------------------------GGRINI--------------------- 144 (263)
T ss_pred -----------------------------------------------------CCCCCC---------------------
T ss_conf -----------------------------------------------------987646---------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44465666644321001220244564457765332124677665543323333310023333432334443323443445
Q gi|254780525|r 230 STNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDF 309 (421)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (421)
+ ......
T Consensus 145 ------p-------------------------------------------------------------------~~~~~~ 151 (263)
T PRK12636 145 ------P-------------------------------------------------------------------TDAQSF 151 (263)
T ss_pred ------C-------------------------------------------------------------------CCCCEE
T ss_conf ------8-------------------------------------------------------------------887258
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHH
Q ss_conf 54776338998414321101222001217867877416952663233587021378887611465231000477899999
Q gi|254780525|r 310 SVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASEL 389 (421)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm 389 (421)
.+++.|.+......+.......+.+..|.+|.+|.+.|++.|..+..++.+....+.....+.|.|++||.||||+-+||
T Consensus 152 ~I~~dG~i~~~~~~g~~~~vg~l~l~~f~~~~~L~~~G~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVn~~~Em 231 (263)
T PRK12636 152 SIGPDGTVSYVDANGENQTAGQIGLATFANPSGLEKAGNNLYRETLNSGAPQVVVPGEGGTGKIQSGALEMSNVDLSEEF 231 (263)
T ss_pred EECCCCEEEEECCCCCCEEEEEEEEEECCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHHHH
T ss_conf 87588528896079950367898999516868730058963751366777554677878764160384761347599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999999975129
Q gi|254780525|r 390 TELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 390 ~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
++||..||+|++++|+|++.|||+++++||||
T Consensus 232 v~mI~~qRaye~n~K~i~~~De~~~~~~nl~R 263 (263)
T PRK12636 232 TEMIVAQRGFQANTRIITTSDEILQELVNLKR 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998899999999999997459
No 23
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=2.4e-39 Score=268.40 Aligned_cols=246 Identities=31% Similarity=0.507 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC---------------CCCCCCCCEEEEEEEEE
Q ss_conf 588999999999999863788775302778671422002465430477---------------77631220588578863
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST---------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~---------------~~~~~G~GV~v~~i~r~ 68 (421)
+++|++|.|||.|+|+.|++++|||||+|||||+|+++.|++.++... .+.++|.||.+..+.+.
T Consensus 1 lr~lyta~SGm~a~~~~ld~iaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Gv~~~~~~~~ 80 (262)
T PRK12691 1 MRALSIAATGMAAQQLNVEVISNNIANMNTTGFKRARAEFQDLLYQQERRVGAQSSDNGTIVPTGVQLGLGVKTAAVRRI 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 93199999999999972578888888777564474746389999877413587666656435655410352475468875
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.++.|++.+|+|+.+++||....+.+...+++...|..+.++.|.+..+......
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~~--------------------- 139 (262)
T PRK12691 81 HTQGTLSQTGNDLDLAIQGRGYFQIQLPDGETAYTRDGAFNRSADGQIVTADGYPVQPG--------------------- 139 (262)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 15787530688213898489568885589957365445267989964892799894676---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
+ .+
T Consensus 140 ---------------i--------~i------------------------------------------------------ 142 (262)
T PRK12691 140 ---------------I--------TI------------------------------------------------------ 142 (262)
T ss_pred ---------------C--------CC------------------------------------------------------
T ss_conf ---------------1--------05------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
|. ....
T Consensus 143 -------p~-------------------------------------------------------------------~~~~ 148 (262)
T PRK12691 143 -------PQ-------------------------------------------------------------------DATS 148 (262)
T ss_pred -------CC-------------------------------------------------------------------CCCC
T ss_conf -------89-------------------------------------------------------------------9851
Q ss_pred CCCCCCCEEEEEECCC-CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 5547763389984143-211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDDG-TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..++..|.+....... .......+.+.+|.++.+|.+.|++.|..+..++.+..+.+.....+.+.|++||.||||+-+
T Consensus 149 i~I~~dG~i~~~~~g~~~~~~vg~l~l~~f~n~~~L~~~g~~lf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (262)
T PRK12691 149 ITINASGQVSVTLDGQTQPQVLGQITLARFTNEAGLEAIGDNLFRETPASGAPQVGVPGEDGFGTIRQGYLEASNVDVVK 228 (262)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEECCCHHHCEECCCCCEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 37878976999846887741777899983178477021588617733677885115678887226843856534465999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
||++||..||+|+|++|+|++.|||+++.+||+|
T Consensus 229 Em~~mI~~qRaye~n~k~i~t~De~~~~a~nllR 262 (262)
T PRK12691 229 EITDLITAQRAYEMNSKVISAADEMLQTTSKNLR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999998668
No 24
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=100.00 E-value=1.1e-43 Score=295.90 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 5889999999999998637887753027786714220024654304777763122058857886303411121
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
++.|+||+|||.|+|++|+||||||||||||||+||+|++++.++...+++++|+||++.+|+|++|++...+
T Consensus 1 ssll~ig~sgL~a~q~al~vt~~NIaN~nT~GYsRq~v~~~~~~~~~~~~~~~G~Gv~v~~i~R~~d~fl~~~ 73 (676)
T PRK05683 1 ASLISIGLSGLGASQTALATTGNNIANVDTAGYSRQQAVQTTKASQFSGAGYIGTGTTLADVRRIYNSFLDAQ 73 (676)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEECCEEEEEEEEHHHHHHHHH
T ss_conf 9678999999999999999873666417998814016663134675567850315889735988160899999
No 25
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=9.9e-39 Score=264.45 Aligned_cols=249 Identities=32% Similarity=0.493 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~ 68 (421)
|.++|++|.|||.++|+.|+|++|||||+||+||+|.++.|.+.++... .+..+|.||++..+.+.
T Consensus 1 M~r~lyta~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~ 80 (264)
T PRK12816 1 MMRSLWTAATGMIAQQYNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQVRAGTPATEDTLIPLGVQVGHGVKVAATQRL 80 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
T ss_conf 95489999999999998578898999877666558574718999887652158876555546666432442562221355
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.++.|++.+|+|+.++++|....+.+...+++...|..+.++.|.+..+......
T Consensus 81 f~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~Vl~~--------------------- 139 (264)
T PRK12816 81 FEQGSLQATGLKTDVAIEGEGFFKILLPDGTYAYTRDGSFKIDSNRQLVTSNGYLLLPE--------------------- 139 (264)
T ss_pred CCCCCCEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 16888540698203898489489997379956388755478999988890999892787---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
+ .. +.....
T Consensus 140 ---------------i----------~~----------P~~~~~------------------------------------ 148 (264)
T PRK12816 140 ---------------I----------IF----------PEEYIL------------------------------------ 148 (264)
T ss_pred ---------------C----------CC----------CCCCCC------------------------------------
T ss_conf ---------------5----------38----------987555------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..
T Consensus 149 ------------------------------------------------------------------------------~~ 150 (264)
T PRK12816 149 ------------------------------------------------------------------------------NS 150 (264)
T ss_pred ------------------------------------------------------------------------------CC
T ss_conf ------------------------------------------------------------------------------64
Q ss_pred CCCCCCCEEEEEEC-CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 55477633899841-43211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYD-DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..+...|.+..... .........+.+..|.+|..|.+.|++.|.....++.+..+.+.....+.+.|++||.||||+-+
T Consensus 151 i~i~~dG~i~~~~~~~~~~~~vg~l~l~~~~np~~L~~~G~nl~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNV~~~~ 230 (264)
T PRK12816 151 IMISEEGIVTVKVGEDIEPIELGQIELYRFVNPAGLQAIGKNLFKETVASGQEIPGTPGSEGMGKVLQGFLEMSNVSIVE 230 (264)
T ss_pred EEECCCCEEEEECCCCCCCEEEEEEEEEEECCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 48878984999538987741556778987227044331378520026667775557778787205832847622365999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
||++||..||+|++++|+|++.|||+++++||||
T Consensus 231 EMv~mI~~qR~fe~~~K~i~t~De~~~~~~nl~R 264 (264)
T PRK12816 231 EMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999986269
No 26
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=100.00 E-value=1.2e-38 Score=263.95 Aligned_cols=246 Identities=31% Similarity=0.496 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~ 68 (421)
|..+|++|.|||.|+|+.|++++|||||+||+||+|+++.|+++++... .+.++|.||++..+.+.
T Consensus 1 M~r~lYta~sGm~a~~~~l~viaNNlANvnT~GfK~~~~~F~~~l~~~~~~~g~~~~~~~~~p~~~~~g~gv~~~~~~~~ 80 (261)
T PRK12693 1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSSQNTTLPSGLQVGTGVRPVATQKI 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEECCCEEE
T ss_conf 96589999999999997457888888877764338574729999987640367766655557765300231230222122
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.++.|++.+|+|+.++++|....+.+...+++...|..+.++.|.+..+...+.
T Consensus 81 fsqG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~---------------------- 138 (261)
T PRK12693 81 FTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQP---------------------- 138 (261)
T ss_pred CCCCCEEECCCCEEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEEEE----------------------
T ss_conf 1577503069820399848807999758984647744436898997589089988665----------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
++ .+
T Consensus 139 --------------~i--------~i------------------------------------------------------ 142 (261)
T PRK12693 139 --------------EI--------TI------------------------------------------------------ 142 (261)
T ss_pred --------------EE--------EC------------------------------------------------------
T ss_conf --------------31--------03------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
|. ....
T Consensus 143 -------p~-------------------------------------------------------------------~~~~ 148 (261)
T PRK12693 143 -------PE-------------------------------------------------------------------NATS 148 (261)
T ss_pred -------CC-------------------------------------------------------------------CCCE
T ss_conf -------89-------------------------------------------------------------------9840
Q ss_pred CCCCCCCEEEEEEC-CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 55477633899841-43211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYD-DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..++.+|.+..... .........+.+.+|.+|.+|.+.|++.|..+..++.+..+.+.....+.+.|++||.||||+-+
T Consensus 149 i~i~~dG~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~G~nlf~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (261)
T PRK12693 149 ITIGTDGTVSVTQAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPVEGTPGLNGLGTLRQGFLETSNVNVVE 228 (261)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEEECCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 47789987999857987624777999996148145331488506534777785336788787225853856544466999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999999997512
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
||++||..||+|+|++|+|++.|||+++++||.
T Consensus 229 Em~~mI~~qR~ye~n~K~i~t~De~l~~~~nll 261 (261)
T PRK12693 229 ELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999789999999999998629
No 27
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=1.8e-37 Score=256.44 Aligned_cols=245 Identities=31% Similarity=0.490 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC--------------CCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465430477--------------77631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST--------------SNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~--------------~~~~~G~GV~v~~i~r~ 68 (421)
|..+|++|.|||.+.|+.++|++|||||+|||||+|+++.|++.++... .+..+|.||.+..+.+.
T Consensus 1 M~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~ 80 (260)
T PRK12694 1 MNRSLWIAKTGLNAQQAQMDVISNNLANVSTNGFKRSRAVFEDLLYQTIRQPGAQSTQQTELPSGLQLGTGVRQVATERL 80 (260)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 92589999999999998488998889877776556472309999887631567665655557765200342166678875
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.+..|++.+|+|+.++++|....+.+...+++...|..+.++.|.+..+.....
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~vl~---------------------- 138 (260)
T PRK12694 81 FTQGNLQQTGNSKDVAINGQGFFQVLMPDGTTAYTRDGSFQTNAQGQLVTSSGYPLQP---------------------- 138 (260)
T ss_pred CCCCCCEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEEEC----------------------
T ss_conf 1678713169831289858957888558995748876646899999888289988740----------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
.+ .+. ...
T Consensus 139 --------------~i--~ip-------------~~~------------------------------------------- 146 (260)
T PRK12694 139 --------------AI--TIP-------------QNA------------------------------------------- 146 (260)
T ss_pred --------------CC--CCC-------------CCC-------------------------------------------
T ss_conf --------------55--348-------------886-------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..
T Consensus 147 ------------------------------------------------------------------------------~~ 148 (260)
T PRK12694 147 ------------------------------------------------------------------------------TS 148 (260)
T ss_pred ------------------------------------------------------------------------------CE
T ss_conf ------------------------------------------------------------------------------05
Q ss_pred CCCCCCCEEEEEECC-CCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 554776338998414-3211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDD-GTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..++..|.+...... ........+.+..|.+|.+|.+.|++.|.....++.+..+.+.....+.+.|++||.||||+-+
T Consensus 149 i~i~~dG~i~~~~~g~~~~~~vg~l~l~~f~n~~~L~~~G~~l~~~~~~~g~~~~~~p~~~~~~~v~qG~LE~SNVd~~~ 228 (260)
T PRK12694 149 LTIGKDGTVSVTQPGSSNAVQIGQLQLATFINPAGLQAKGENLFAETTSSGAPNVSQPGLNGAGTLKQGYVEASNVNVVE 228 (260)
T ss_pred EEECCCCEEEEECCCCCCCEEEEEEEEEEECCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEECCCEECCCCCHHH
T ss_conf 78757860888517986531446899985037166420589731203677887546678787316844867521463999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999751
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
||++||..||+|+|++|+|++.||||++|++|
T Consensus 229 Emv~mI~~qRaye~~~k~i~t~De~l~~~~ql 260 (260)
T PRK12694 229 ELVNMIQTQRAYEINSKAVTTSDQMLQRLTQM 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999988999999999998668
No 28
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=1.4e-37 Score=257.20 Aligned_cols=246 Identities=31% Similarity=0.490 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC---------------CCCCCCCCCEEEEEEEEE
Q ss_conf 58899999999999986378877530277867142200246543047---------------777631220588578863
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS---------------TSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~---------------~~~~~~G~GV~v~~i~r~ 68 (421)
+.+|++|.|||.|+|+.|++++|||||+|||||+|.++.|++.++.. ..+..+|.||++..+.+.
T Consensus 1 lr~ly~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~ 80 (262)
T PRK12692 1 MRALAIAATGMSAQQLNVEVIANNIANLNTTGFKRARAEFTDLLYQAERQQGVPNQAGQEAVPEGAMLGLGVRAAAIRNL 80 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 92399999999999971478888998777664585746389999877521477665677446766532341355357875
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.+..|++.+|+|+.++++|....+.+...+++...|..+.++.|.+..+......
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~v~~~--------------------- 139 (262)
T PRK12692 81 HRQGPLAQTGNPLDLAVNGRGWFQVTGPNGEINYTRAGSFNKNADGQLVTAEGYAVDPA--------------------- 139 (262)
T ss_pred CCCCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCCCC---------------------
T ss_conf 15787421698103898689679997479958789745378999999881788774775---------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
+..+ . + ..
T Consensus 140 -------------------------i~~p-----~-------------------~-~~---------------------- 147 (262)
T PRK12692 140 -------------------------ILIP-----Q-------------------N-TT---------------------- 147 (262)
T ss_pred -------------------------CCCC-----C-------------------C-CE----------------------
T ss_conf -------------------------2168-----8-------------------8-51----------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
.
T Consensus 148 -------------------------------------------------------------------------------~ 148 (262)
T PRK12692 148 -------------------------------------------------------------------------------Q 148 (262)
T ss_pred -------------------------------------------------------------------------------E
T ss_conf -------------------------------------------------------------------------------5
Q ss_pred CCCCCCCEEEEEECC-CCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 554776338998414-3211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDD-GTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..++..|.+...... ........+.+..|.++.+|.+.|++.|..+..++.+..+.+.....+.+.|++||.||||+-+
T Consensus 149 i~i~~~G~i~~~~~g~~~~~~ig~l~l~~f~~~~~L~~~g~~l~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~ 228 (262)
T PRK12692 149 VTINESGQVFAKLDGQVTPQLLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGVPGDVGFGKIQQGYLESSNVDPVK 228 (262)
T ss_pred EEECCCCEEEEECCCCCCCCEEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCCCHHH
T ss_conf 88779855999527876753000588996158020325688620146667785446788787453831761035565999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
||++||..||+|++++|+|++.|||++++-+++|
T Consensus 229 EMv~mI~~qRafe~n~k~i~~~Dem~~~~~~liR 262 (262)
T PRK12692 229 EITELISAQRAFEMNSKVIQAADEMAGTVSKGIR 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999997639
No 29
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=100.00 E-value=3.1e-37 Score=254.96 Aligned_cols=250 Identities=34% Similarity=0.537 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC--------------CCCCCCCCCEEEEEEEEE
Q ss_conf 458899999999999986378877530277867142200246543047--------------777631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS--------------TSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~--------------~~~~~~G~GV~v~~i~r~ 68 (421)
|.++|.+|.|||.|+|+.|++++|||||+||+||+|.++.|.++++.. ..++++|.||++..+.++
T Consensus 1 M~r~ly~a~sGM~aqq~kld~IsNNlANvNT~GfK~~~a~F~dll~q~~~~~~~~~~~~~~~p~~~~vg~Gv~~~~~~~~ 80 (265)
T COG4786 1 MLRGLYTAASGMMAQQRKLDVISNNLANVNTTGFKRDRAEFEDLLYQTINTAGAPNSNSTTSPSGGQVGLGVRVNETYTV 80 (265)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEEEEEE
T ss_conf 90578898778999998655652120237775504454506999999874268877666446655256654144247864
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.++.|++.+|+|+.+.+||....++|...+++...|..+.++.|.+..+....
T Consensus 81 ~tqGsl~~T~n~lD~AI~g~gfF~I~~~dG~~~YTR~G~F~~d~~G~LVT~~G~~vl----------------------- 137 (265)
T COG4786 81 FTQGSLQKTDNPLDLAITGDGFFQIQTPDGTIAYTRDGSFTVDEEGQLVTSNGYPVL----------------------- 137 (265)
T ss_pred CCCCCCEECCCCCCEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCCC-----------------------
T ss_conf 044674106985435874782699984998788852774468899878807997745-----------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
+..|..+.+....
T Consensus 138 ---------------------------------------------------~~~G~~i~i~~~~---------------- 150 (265)
T COG4786 138 ---------------------------------------------------DSGGNPITIPNNA---------------- 150 (265)
T ss_pred ---------------------------------------------------CCCCCCEECCCCC----------------
T ss_conf ---------------------------------------------------7888724528874----------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
..
T Consensus 151 ------------------------------------------------------------------------------~~ 152 (265)
T COG4786 151 ------------------------------------------------------------------------------GS 152 (265)
T ss_pred ------------------------------------------------------------------------------EE
T ss_conf ------------------------------------------------------------------------------45
Q ss_pred CCCCCCCEEEEEECCC-CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 5547763389984143-211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 309 FSVSKDGYVDIIYDDG-TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
..+...|.+....... .......+.+..|.||.+|.+.|++.|..+..++ +..+.+.....+.+.|+.||.|+||+-|
T Consensus 153 i~i~~dG~v~~~~~~~~~~~~~g~i~lv~f~n~~gL~k~G~nl~~~t~~sg-~~~~~~~~~~~g~i~QG~lE~SNVn~v~ 231 (265)
T COG4786 153 ITIGKDGTVSVTIRGNTDPVQVGQIGLVNFDNPAGLKKIGNNLYQETAASG-PIVGVPGDNGFGAIRQGFLEASNVNVVE 231 (265)
T ss_pred EEECCCCEEEEEECCCCCCEEEEEEEEEEECCCHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCHHCCCCHHH
T ss_conf 553256447899658866147536889981380664330775310168877-7546778787552786412120567999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999999999975129
Q gi|254780525|r 388 ELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 388 Em~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
||++||..||+|++|+|+|++.|||+.++.+++|
T Consensus 232 EMt~mI~aqRayE~nsK~i~~~D~m~~~~~n~~~ 265 (265)
T COG4786 232 EMTDMIEAQRAYEANSKVIQTADEMLGKANNLLR 265 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999887886658999999986549
No 30
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=1.2e-36 Score=251.24 Aligned_cols=251 Identities=29% Similarity=0.481 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC----------CCCCCCCCCEEEEEEEEEECCC
Q ss_conf 458899999999999986378877530277867142200246543047----------7776312205885788630341
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS----------TSNSYVSGGLEISTKDMISEQG 72 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~----------~~~~~~G~GV~v~~i~r~~~~~ 72 (421)
|+.+|++|.|||.+.|+.++|++|||||+|||||+|.++.|.+.++.. ......|.||.+..+.+.+.||
T Consensus 1 M~rglYta~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~F~~~~~~~~~~~~~~~~~~~~~~~g~gv~~~~~~~~~~qG 80 (261)
T PRK12817 1 MLRALWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFQDLVQETLDRKGYPVNDRKNIITGTGVKATNWIRDNQQG 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 95689999999999998678998889877774437471128999987622467665678764003338740247654887
Q ss_pred CEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11214830221103666201017988256420112221236720145562011111013455543234454444444445
Q gi|254780525|r 73 SLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHA 152 (421)
Q Consensus 73 ~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (421)
.++.|++.+|+|+.++++|....+.+...+++...|..+.++.|.+..+.......
T Consensus 81 ~l~~Tg~~lDlAI~G~GfF~V~~~~G~~~yTR~G~f~~d~~G~Lvt~~G~~v~~~~------------------------ 136 (261)
T PRK12817 81 NLLTTGNKTDLAIDGEGFFRVIMPDGTYAYTRAGNFNIDSNGMLVDENGNRLEIQY------------------------ 136 (261)
T ss_pred CEEECCCCCEEEECCCCEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEECCCC------------------------
T ss_conf 83536984238985884799983899676886886479999998989998821456------------------------
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCC
Q ss_conf 54543332112331024554444444444567765432221036754068873677876213555542047763044444
Q gi|254780525|r 153 ELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTN 232 (421)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (421)
...+ . .
T Consensus 137 -----------------------------------------------~~~~-----------~--~-------------- 142 (261)
T PRK12817 137 -----------------------------------------------QPEG-----------V--G-------------- 142 (261)
T ss_pred -----------------------------------------------CCCC-----------C--C--------------
T ss_conf -----------------------------------------------6766-----------6--6--------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65666644321001220244564457765332124677665543323333310023333432334443323443445547
Q gi|254780525|r 233 NSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVS 312 (421)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (421)
.. .....-......++
T Consensus 143 --~~--------------------------------------------------------------~~~~~~~~~~i~i~ 158 (261)
T PRK12817 143 --IL--------------------------------------------------------------NRNGGFDSNNINIA 158 (261)
T ss_pred --CC--------------------------------------------------------------CCCCCCCCCEEEEC
T ss_conf --67--------------------------------------------------------------77777777628989
Q ss_pred CCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHH
Q ss_conf 76338998414321101222001217867877416952663233587021378887611465231000477899999999
Q gi|254780525|r 313 KDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTEL 392 (421)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nL 392 (421)
..|.+..............+.+..+.++..|.+.|++.|......... ......+.|++||.||||+-+||++|
T Consensus 159 ~dG~i~~~~~~~~~~~vg~l~l~~~~~~~~L~~~G~~l~~~~~~~~~~------~~~~~~v~qG~LE~SNV~~~~EMv~l 232 (261)
T PRK12817 159 EDGSISVKDVDGQNKKVGKINIYNAVGDDAFISIGDNLYVPSDGAQVF------LNNDVSILQGYLENSNVDLGKEMTDM 232 (261)
T ss_pred CCCEEEEECCCCCEEEEEEEEEECCCCCHHCEECCCCEEEECCCCCCC------CCCCCEEECCCEEHHCCCHHHHHHHH
T ss_conf 996699823898617878888861378054367589558707888777------68886186485211217399999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999975129
Q gi|254780525|r 393 IEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 393 i~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
|..||+|++|+|+|++.|||+..+.||||
T Consensus 233 i~~qRaye~n~k~i~t~Dem~~~~nnlrr 261 (261)
T PRK12817 233 IITQRAFQLSSKGIKTADEMWGIINNMRK 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999998999999999999986179
No 31
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=2.8e-33 Score=229.69 Aligned_cols=239 Identities=25% Similarity=0.346 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC------CCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 45889999999999998637887753027786714220024654304777------763122058857886303411121
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS------NSYVSGGLEISTKDMISEQGSLMH 76 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~------~~~~G~GV~v~~i~r~~~~~~~~~ 76 (421)
|.++|++|.|||.+.|+.|+|++|||||+||+||+|+++.|++.+..... ......+|...+..+.+.||.+..
T Consensus 1 M~~~lYta~Sgm~a~q~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~d~~qG~l~~ 80 (253)
T PRK12689 1 MQNALLVGLSRQMALERQLDVVANNVANVNTNGFKADRSLFQEYLMPGAHEDNFVGPDRRVSYVQDRGTYLDFSQGPLEQ 80 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECEEEEECCCCCEEE
T ss_conf 90289999999999997127887889867765437361127998621256667667776314688420475527878132
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 48302211036662010179882564201122212367201455620111110134555432344544444444455454
Q gi|254780525|r 77 TASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSA 156 (421)
Q Consensus 77 t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (421)
|++.+|+|+.++++|....+.+. .+++...|..+.++.|.+..+...+... ..
T Consensus 81 Tg~~lDlAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~Vl~~~-----gp--------------------- 133 (253)
T PRK12689 81 TKNPLDVAIDGDAFLAVQTPQGE-RYTRDGALEINAQGQLVTSSGYPVLGTG-----GP--------------------- 133 (253)
T ss_pred CCCCCEEEECCCCEEEEECCCCC-CEEECCCEEECCCCCEEECCCCEEECCC-----CC---------------------
T ss_conf 59830399879817999727875-0675461679899868908998816799-----97---------------------
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 33321123310245544444444445677654322210367540688736778762135555420477630444446566
Q gi|254780525|r 157 MPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFP 236 (421)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (421)
+.. . .. . .
T Consensus 134 -------i~~--~------------p~-~--------~------------------------------------------ 141 (253)
T PRK12689 134 -------IVF--Q------------PT-D--------T------------------------------------------ 141 (253)
T ss_pred -------EEE--C------------CC-C--------C------------------------------------------
T ss_conf -------260--8------------98-8--------6------------------------------------------
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 66443210012202445644577653321246776655433233333100233334323344433234434455477633
Q gi|254780525|r 237 YNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGY 316 (421)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (421)
...+.+.|.
T Consensus 142 -----------------------------------------------------------------------~i~I~~dG~ 150 (253)
T PRK12689 142 -----------------------------------------------------------------------DINISPDGT 150 (253)
T ss_pred -----------------------------------------------------------------------CEEECCCCC
T ss_conf -----------------------------------------------------------------------337768970
Q ss_pred EEEEECCC-CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHH
Q ss_conf 89984143-21101222001217867877416952663233587021378887611465231000477899999999999
Q gi|254780525|r 317 VDIIYDDG-TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEA 395 (421)
Q Consensus 317 ~~~~~~~~-~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~ 395 (421)
+....... .......+.+..|.++.+|.+.|++.|......+.+ ...+.+.|++||.||||+-+||++||..
T Consensus 151 i~~~~~~~~~~~~~g~l~l~~~~~~~~L~~~G~~l~~~~~~~~~~-------~~~~~v~qG~LE~SNVd~~~EM~~mI~~ 223 (253)
T PRK12689 151 VSVLEGTATTDSIRGKLRLVTFANPQQLTKEGANLYAAGAPARAP-------DTKARVEQGYIEKSNVNAVLEMTRMMEV 223 (253)
T ss_pred EEECCCCCCCCCEEEEEEEEECCCHHHHEECCCCEEECCCCCCCC-------CCCCEEECCCEECCCCCHHHHHHHHHHH
T ss_conf 897048876631345789982388677001589558578887788-------8886160273220236499999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999975
Q gi|254780525|r 396 QRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 396 Q~aYqAsArvItt~demldtLln 418 (421)
||+|++++|+|++.|||++++|+
T Consensus 224 qRafe~n~k~i~~~Dem~~~ai~ 246 (253)
T PRK12689 224 TRTYTQVSSMLQQQSDLRKTAIE 246 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999
No 32
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=100.00 E-value=7.3e-33 Score=227.07 Aligned_cols=229 Identities=35% Similarity=0.566 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC-CCCCCCCCEEEEEEEEEECCCCEEECCCHHHHH
Q ss_conf 8999999999999863788775302778671422002465430477-776312205885788630341112148302211
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST-SNSYVSGGLEISTKDMISEQGSLMHTASNTDLA 84 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~-~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~a 84 (421)
+|++|.|||.++|++|++++|||||+|||||+|+++.|++.++... ...+.+.||.+..+.+.+.||.++.|++.+|+|
T Consensus 2 sly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~~F~~~~~~~~~~~~~~~~gv~~~~~~~~~~qG~l~~Tg~~lDlA 81 (231)
T TIGR03506 2 ALYTALSGLNAQSKALDVIANNIANANTTGFKASRAEFSDLLAQSGSGSGQVGGGVRAAAVGTDFSQGSLQTTGNPLDLA 81 (231)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCEEECCCCCEEE
T ss_conf 48999999999998678888888877764435472417887523478877555457841568763888825668832189
Q ss_pred HCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 03666201017988256420112221236720145562011111013455543234454444444445545433321123
Q gi|254780525|r 85 IQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFI 164 (421)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (421)
+.++++|....+.+...+++...|..+.++.|.+..+...+.+....
T Consensus 82 I~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lv~~~G~~vlg~~g~~--------------------------------- 128 (231)
T TIGR03506 82 INGDGFFAVQTPDGSEAYTRAGSFQLDANGYLVTADGYPLLGWGGGP--------------------------------- 128 (231)
T ss_pred ECCCEEEEEECCCCCEEEEECCCEEECCCCCEECCCCCEEECCCCCC---------------------------------
T ss_conf 86963899988999784876453789899988878998807778887---------------------------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 31024554444444444567765432221036754068873677876213555542047763044444656666443210
Q gi|254780525|r 165 SNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNT 244 (421)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (421)
T Consensus 129 -------------------------------------------------------------------------------- 128 (231)
T TIGR03506 129 -------------------------------------------------------------------------------- 128 (231)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 01220244564457765332124677665543323333310023333432334443323443445547763389984143
Q gi|254780525|r 245 VEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDG 324 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (421)
...........++..|.+.+.....
T Consensus 129 -------------------------------------------------------~~~~~~~~~~~i~~dG~i~~~~~~~ 153 (231)
T TIGR03506 129 -------------------------------------------------------ITIPPDAAGVEIGEDGTVSATYSNG 153 (231)
T ss_pred -------------------------------------------------------CCCCCCCCEEEECCCCEEEEECCCC
T ss_conf -------------------------------------------------------6457777416987895399850799
Q ss_pred CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 211012220012178678774169526632335870213788876114652310004778999999999999999999
Q gi|254780525|r 325 TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVN 402 (421)
Q Consensus 325 ~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAs 402 (421)
.......+.+.+|.++..|.+.|++.|.....++.+....+.....+.+.|++||.|+||+-+||++||..||+||||
T Consensus 154 ~~~~v~~i~l~~~~~~~~L~~~g~~~~~~~~~~g~~~~~~~~~~~~~~v~qG~LE~SNVd~~~em~~mi~~qR~fe~N 231 (231)
T TIGR03506 154 QTQEVGQLALVNFPNPNGLQKEGGNLFRATDGSGAPLVGAPGTGGLGSLVQGALEGSNVDAVAEMVDMISAQRAYEAN 231 (231)
T ss_pred CCEEEEEEEEEECCCHHHCEECCCCEEEECCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 715878999995068688158589679844777775235678888236970732620265999999999997756089
No 33
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=4.3e-32 Score=222.14 Aligned_cols=239 Identities=29% Similarity=0.485 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHH---HHHCC-----------CCCCCCCCCEEEEEEEEE
Q ss_conf 4588999999999999863788775302778671422002465---43047-----------777631220588578863
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSS---LVFPS-----------TSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~---~~~~~-----------~~~~~~G~GV~v~~i~r~ 68 (421)
|..+|++|.|||.+.|+.+++++|||||+|||||+|+++.+.+ .+... ...+.++.||.+..+...
T Consensus 1 M~~~ly~a~sgm~a~~~~ldviaNNlAN~nT~GfK~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (255)
T PRK12818 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENYDKKVGNKNIKNIIGGLSMGSKIDEVNTL 80 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 96689999999999998778998999877756448585006568999864104446786666644541452264356764
Q ss_pred ECCCCEEECCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 03411121483022110366620101798825642011222123672014556201111101345554323445444444
Q gi|254780525|r 69 SEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERIN 148 (421)
Q Consensus 69 ~~~~~~~~t~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (421)
+.||.+++|++.+|+|+.++++|... ..+...+++...|..+.++.|.+..+...+.....
T Consensus 81 ~~qG~l~~Tg~~lDlAI~G~GfF~V~-~~g~~~yTR~G~f~vd~~G~Lvt~~G~~vLg~~~~------------------ 141 (255)
T PRK12818 81 FTQGIIKSTDKPTDFAIQGRGFFTVE-RNGRNYYTRDGHFHVDTQGYLVNDSGYYVMGINNA------------------ 141 (255)
T ss_pred CCCCCEEECCCCCEEEECCCCEEEEE-CCCCEEEEECCCEEECCCCCEECCCCCEEECCCCC------------------
T ss_conf 27878454598104998698589995-59965899756577989976892899892078888------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECC
Q ss_conf 44455454333211233102455444444444456776543222103675406887367787621355554204776304
Q gi|254780525|r 149 VKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQD 228 (421)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (421)
.+....+.+
T Consensus 142 -----------------------------------------------------~~~~~pi~~------------------ 150 (255)
T PRK12818 142 -----------------------------------------------------TGAREPIYV------------------ 150 (255)
T ss_pred -----------------------------------------------------CCCCCCEEC------------------
T ss_conf -----------------------------------------------------777566514------------------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44446566664432100122024456445776533212467766554332333331002333343233444332344344
Q gi|254780525|r 229 QSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKD 308 (421)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (421)
....
T Consensus 151 ----------------------------------------------------------------------------~~~~ 154 (255)
T PRK12818 151 ----------------------------------------------------------------------------GNKK 154 (255)
T ss_pred ----------------------------------------------------------------------------CCCC
T ss_conf ----------------------------------------------------------------------------8980
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHH
Q ss_conf 55477633899841432110122200121786787741695266323358702137888761146523100047789999
Q gi|254780525|r 309 FSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASE 388 (421)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEE 388 (421)
..++..|.+... ........+.+|.++..|.+.|++.|... .+.......+.|++||.|+||+-+|
T Consensus 155 i~i~~dG~i~~~-----~~~~~~l~~~~~~~~~~L~~~G~~lf~~~---------~~~~~~~~~v~qG~LE~SNVn~~~E 220 (255)
T PRK12818 155 FSTDASGNISLD-----GVPSYKFQVADFNDYNSLKKIGDNLYSGN---------NPINNNGAIVRQNSLEKSNVNVTNE 220 (255)
T ss_pred EEECCCCEEEEC-----CCCCEEEEEEECCCHHHCEECCCCCCCCC---------CCCCCCCCEEEECCEECCCCCHHHH
T ss_conf 898898259855-----75412689981488043637688751379---------8775777338726410012689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 999999999999999999999999999975-129
Q gi|254780525|r 389 LTELIEAQRNYAVNSKVFQTGSDFMDILIS-LKR 421 (421)
Q Consensus 389 m~nLi~~Q~aYqAsArvItt~demldtLln-l~R 421 (421)
|++||..||+|++++|+|++.|||++.++| |-|
T Consensus 221 M~~mI~~qRafe~~~k~i~t~De~~~~a~n~lg~ 254 (255)
T PRK12818 221 MVNMMTTMRSFETNQKIVQSIDETLGKAVNEVGS 254 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999999997436
No 34
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=100.00 E-value=2.5e-31 Score=217.31 Aligned_cols=121 Identities=23% Similarity=0.287 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
|..+|++|.|||.|+|+.|+|++|||||+||+||+|+++.|.+.+....+. ....++........+.||.+..|++.+|
T Consensus 1 M~r~ly~a~sgm~a~q~~ldvisNNlANvnT~GfK~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~qG~l~~Tg~~lD 79 (246)
T PRK12640 1 MDKALYTAMSGASQNLNQQAVHANNLANASTPGFRADLAQARAVPVFGEGL-PTRVFALASTPGADFTPGPIQTTGRPLD 79 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCHHHHHHHHCCCCCC-CCCEEEEECCCCEEECCCCEEECCCCCE
T ss_conf 914899999999999985788988888677776601456454002248777-7303675034411417887355698330
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 110366620101798825642011222123672014556201
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL 124 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 124 (421)
+|+.++++|....+.+...+++...|..+.++.|.+..+...
T Consensus 80 lAI~G~GfF~V~~~~G~~~yTR~G~F~~d~~G~Lvt~~G~~V 121 (246)
T PRK12640 80 VALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLVTANGLPV 121 (246)
T ss_pred EEECCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCEE
T ss_conf 887699579998799854257756289999998892789896
No 35
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=100.00 E-value=4.6e-31 Score=215.57 Aligned_cols=121 Identities=23% Similarity=0.378 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC---------CCCCCCCCCCEEEEEEEEEECCCCE
Q ss_conf 5889999999999998637887753027786714220024654304---------7777631220588578863034111
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP---------STSNSYVSGGLEISTKDMISEQGSL 74 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~---------~~~~~~~G~GV~v~~i~r~~~~~~~ 74 (421)
+++|++|.|||.++|+.|+|++|||||+||+||+++++.+...... ....+.++.||.+..+...+.||.+
T Consensus 1 lrglY~a~sGm~a~q~~ldviaNNlANvnT~GfK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~qG~l 80 (257)
T PRK12819 1 MNGLYIGSMGMMNYMQHINVHSNNVANAQTTGFKAENMTSKVFDVQDTYRRGDGAVTNIGSVDYAVVPAATHVNLVQGNI 80 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCEEEECCCCCC
T ss_conf 92899999999999987889989998777732183523688888665301588766655432341362101540356652
Q ss_pred EECCCHHHHHHC----CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCH
Q ss_conf 214830221103----66620101798825642011222123672014556201
Q gi|254780525|r 75 MHTASNTDLAIQ----GKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVL 124 (421)
Q Consensus 75 ~~t~~~~d~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 124 (421)
..|++.+|+|+. +.++|......+...+++...|..+.++.|.+..+...
T Consensus 81 ~~Tg~~lDlAi~~~~~g~g~F~v~~~~g~~~yTR~G~F~~d~~G~Lvt~~G~~V 134 (257)
T PRK12819 81 QMTNSDTDFFLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTSSGAFV 134 (257)
T ss_pred CCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCEEECCCCCEEECCCCCC
T ss_conf 026886320445135678558998389967898666568989987891899983
No 36
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.97 E-value=2.1e-30 Score=211.33 Aligned_cols=236 Identities=26% Similarity=0.368 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
|..+|++|.|||.+.|+.++|++|||||+|||||+|+++.|++......+..... .+........+.||.+..|++.+|
T Consensus 1 M~~~~Yta~sg~~a~~~~ldviaNNlANvnT~GfK~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~d~~qG~l~~Tg~~lD 79 (237)
T PRK12690 1 MDAAGYTTLTRQSGLMREMQVVANNIANSSTTGFRREGLVFSEYVKSTGGEASLS-MASAGARQTSLEQGGLTQTGGQFD 79 (237)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCEEECCCCCE
T ss_conf 9168999999999999867889889987777432726344899986247887633-134663465417768455698215
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG 162 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
+|+.++++|....+.+. .+++...|..+.++.|.+..+.....
T Consensus 80 lAI~G~GfF~V~~~~g~-~yTR~G~F~~d~~G~Lvt~~G~~VL~------------------------------------ 122 (237)
T PRK12690 80 LAIEGEGFFMVETPQGE-RLTRAGAFTPNAEGELVTPDGYRLLD------------------------------------ 122 (237)
T ss_pred EEECCCCEEEEEECCCC-EEEECCCEEECCCCCEECCCCCEEEC------------------------------------
T ss_conf 99858957999807983-69973627898998889389989157------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r 163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (421)
..|.++.+....
T Consensus 123 --------------------------------------~~g~pI~ip~~~------------------------------ 134 (237)
T PRK12690 123 --------------------------------------AGGAPIFIPPDA------------------------------ 134 (237)
T ss_pred --------------------------------------CCCCCEEECCCC------------------------------
T ss_conf --------------------------------------999834837998------------------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 10012202445644577653321246776655433233333100233334323344433234434455477633899841
Q gi|254780525|r 243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYD 322 (421)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (421)
. ...+++.|.+..
T Consensus 135 --~--------------------------------------------------------------~~~I~~dG~i~~--- 147 (237)
T PRK12690 135 --R--------------------------------------------------------------SVAVGADGTISA--- 147 (237)
T ss_pred --C--------------------------------------------------------------EEEECCCCEEEE---
T ss_conf --5--------------------------------------------------------------379989970965---
Q ss_pred CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43211012220012178678774169526632335870213788876114652310004778999999999999999999
Q gi|254780525|r 323 DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVN 402 (421)
Q Consensus 323 ~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAs 402 (421)
.......+.+..+.++..|.+.|++.|....... + ...+.+.|++||.||||+-+||++||..||+|+++
T Consensus 148 --~~~~vg~l~l~~~~~~~~L~~~g~~~~~~~~~~~-~-------~~~~~v~qG~LE~SNVn~~~EMv~mI~~qR~fe~~ 217 (237)
T PRK12690 148 --DGQPLGQVGLFQPDDPLGLRREGGTRFRAEGGVE-P-------AEGASLLQGFLEGSNVNPILEIARMIEVQRAYELG 217 (237)
T ss_pred --CCEEEEEEEEEECCCHHHHEECCCCEECCCCCCC-C-------CCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --8868788889812783770577894572788878-7-------77874873521012268999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HCC
Q ss_conf 9999999999999975-129
Q gi|254780525|r 403 SKVFQTGSDFMDILIS-LKR 421 (421)
Q Consensus 403 ArvItt~demldtLln-l~R 421 (421)
+|+|++.|||++.+|| |.|
T Consensus 218 ~k~i~~~De~~~~ain~lGr 237 (237)
T PRK12690 218 QSFLDAEDDRIRQTIRTLGR 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHHCC
T ss_conf 89999999999999998569
No 37
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.97 E-value=3.9e-29 Score=203.30 Aligned_cols=236 Identities=22% Similarity=0.362 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
|..+|++|.|||.+.|+.|++++|||||+|||||+|+++.|.+......... .. .+........+.||.++.|++.+|
T Consensus 1 M~~~lY~a~sgm~a~~~~ldviaNNlANvnT~GfK~~~~~F~~~l~~~~~~~-~~-~~~~~~~~~~~~qG~l~~Tg~~lD 78 (241)
T PRK12642 1 MQSGLYVALSSQMALEKRLDTIADNVANANTVGFRAEEVKFDTIVSNKASTD-VS-FASAGKSYISTEAGPLTKTGNPLD 78 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHCCCCCC-CC-CCCCCCCEECCCCCCEEECCCCCE
T ss_conf 9058999999999999846889888987776533736244688860347787-42-014774122158878466698313
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG 162 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
.|+.++++|....+.+. .+++...|..+.++.|.+..+.......
T Consensus 79 ~AI~G~GFF~V~~~~g~-~yTR~G~F~~~~~G~Lvt~~G~~vL~~~---------------------------------- 123 (241)
T PRK12642 79 VAVKGDAWFSFDTPAGQ-VYTRDGRFTMLETGELVSVTGYPVLDAG---------------------------------- 123 (241)
T ss_pred EEECCCCEEEEECCCCC-EEEECCCEEECCCCCEECCCCCEEECCC----------------------------------
T ss_conf 99848836999659985-7886164889899988958998914799----------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r 163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (421)
|..+.+.. . .....
T Consensus 124 ----------------------------------------g~pI~v~p----~---~~~~~------------------- 137 (241)
T PRK12642 124 ----------------------------------------GAPIQLNP----G---GGPPR------------------- 137 (241)
T ss_pred ----------------------------------------CCCEEECC----C---CCEEE-------------------
T ss_conf ----------------------------------------98559789----9---85189-------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 10012202445644577653321246776655433233333100233334323344433234434455477633899841
Q gi|254780525|r 243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYD 322 (421)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (421)
+...|.+..
T Consensus 138 --------------------------------------------------------------------I~~dG~i~~--- 146 (241)
T PRK12642 138 --------------------------------------------------------------------IGADGAIYQ--- 146 (241)
T ss_pred --------------------------------------------------------------------ECCCCEEEE---
T ss_conf --------------------------------------------------------------------837961953---
Q ss_pred CCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43211012220012178678774169526632335870213788876114652310004778999999999999999999
Q gi|254780525|r 323 DGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVN 402 (421)
Q Consensus 323 ~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAs 402 (421)
.......+.+.++.++..|...|++.|....... +.. ......+.|++||.|+||+-+||++||..||+||++
T Consensus 147 --~~~~vg~i~l~~~~~~~~l~~~g~~~~~~~~~~~-~~~----~~~~~~v~qG~LE~SNVd~~~EM~~lI~~qRafe~~ 219 (241)
T PRK12642 147 --NGVQVGALGLFEIPADAGLARYGNSGVIPDKPAQ-PVV----DRNSVGVVQGYLEGSNVNAMTEMTRLISVSRAFESV 219 (241)
T ss_pred --CCEEEEEEEEEECCCCCCCEECCCCCEEECCCCC-CCC----CCCCCCEECCCCHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf --8878888899943795003264787535078887-665----788871775741033062999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999751
Q gi|254780525|r 403 SKVFQTGSDFMDILISL 419 (421)
Q Consensus 403 ArvItt~demldtLlnl 419 (421)
+|+|++.|||++.+++-
T Consensus 220 ~k~i~~~D~~l~~ai~~ 236 (241)
T PRK12642 220 SSLMRDSESSVSEAIKT 236 (241)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998
No 38
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.96 E-value=2.2e-28 Score=198.49 Aligned_cols=112 Identities=22% Similarity=0.320 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
|.++|++|+|||.+.|+.|+|++|||||+||+||+|+...+...+...... .....+....+.+.||.++.|++.+|
T Consensus 1 M~r~lY~a~sgm~a~q~~ldvisNNLANvnT~GfK~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~qG~l~~Tg~~lD 77 (252)
T PRK12641 1 MESIIYASMTAANKLLEKQARIANNLANISTPGFKEEFELKILLPNQKNLN---SQEDNFLKEYYNKNPGTLRRTNRNLD 77 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC---CCCCCCCCCEEECCCCCEECCCCCEE
T ss_conf 935899999999999998899999998787765506389887644213456---66653243212148746101698102
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 11036662010179882564201122212367201
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLE 117 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (421)
+|+.++++|......+...+++...|..+.++.|.
T Consensus 78 lAI~G~GfF~v~~~~G~~~YTR~G~F~ld~~G~L~ 112 (252)
T PRK12641 78 LIIKKNGWLVIKDDNGQEAYTKNGHFKINSNRKLT 112 (252)
T ss_pred EEECCCCEEEEECCCCCEEEEECCCEEECCCCCEE
T ss_conf 89858976999779996789972547898999889
No 39
>TIGR02490 flgF flagellar basal-body rod protein FlgF; InterPro: IPR012836 Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. This entry contains proteins only from the proteobacteria, and not in the epsilon subdivision (where the architecture of the related FlgE protein differs substantially from other lineages).; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=99.78 E-value=6.7e-18 Score=131.69 Aligned_cols=236 Identities=23% Similarity=0.350 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHH-HCCCCCCCCCCCEEE--EEEEEEECCCCEEECCCHHH
Q ss_conf 899999999999986378877530277867142200246543-047777631220588--57886303411121483022
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV-FPSTSNSYVSGGLEI--STKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~-~~~~~~~~~G~GV~v--~~i~r~~~~~~~~~t~~~~d 82 (421)
.|++|+||-...=.+..|++||+|||||+||.+|-..+.+++ ..+.+- -+-+-| ...--.+.+|.+++|++.||
T Consensus 1 llYtAMsGA~~~l~qQ~~~ANNLAN~~T~GFradl~~~ra~~Mv~G~G~---ptR~~v~~~~~G~D~~~G~~~~TGR~LD 77 (254)
T TIGR02490 1 LLYTAMSGAKRTLEQQAVHANNLANASTTGFRADLEAARAVPMVDGDGL---PTRTFVLASTPGADFSPGSLQTTGRDLD 77 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC---CHHHHHHCCCCCCCCCCCCCEECCCCCC
T ss_conf 9001366899999999999865422570678999988663000027984---0566422135367888886023487300
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11036662010179882564201122212367201455620111110134555432344544444444455454333211
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTG 162 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (421)
.|+.+.+|+....++|...|++...+..+.+|.|.+..++..
T Consensus 78 vA~~G~Gw~AVq~pdG~EAYTR~G~l~~da~G~L~t~~G~PV-------------------------------------- 119 (254)
T TIGR02490 78 VALQGDGWIAVQAPDGSEAYTRAGNLQVDANGTLQTASGHPV-------------------------------------- 119 (254)
T ss_pred EEECCCCEEEEECCCCCEECEECCCEEECCCCCEEECCCCCE--------------------------------------
T ss_conf 446488528987799586111427610165541311178737--------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 23310245544444444445677654322210367540688736778762135555420477630444446566664432
Q gi|254780525|r 163 FISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPL 242 (421)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (421)
.++.|.+++
T Consensus 120 ------------------------------------lG~gGgPI~----------------------------------- 128 (254)
T TIGR02490 120 ------------------------------------LGEGGGPIT----------------------------------- 128 (254)
T ss_pred ------------------------------------EECCCCEEE-----------------------------------
T ss_conf ------------------------------------507986145-----------------------------------
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEE
Q ss_conf 100122024456445776533212467766554332333331002333343233444332344-3445547763389984
Q gi|254780525|r 243 NTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGK-PKDFSVSKDGYVDIIY 321 (421)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 321 (421)
... .....|..+|.+.+.-
T Consensus 129 ------------------------------------------------------------~P~P~~~~~Ig~DGTis~~p 148 (254)
T TIGR02490 129 ------------------------------------------------------------IPPPYSKIEIGADGTISVIP 148 (254)
T ss_pred ------------------------------------------------------------ECCCCCEEEECCCCEEEEEC
T ss_conf ------------------------------------------------------------36887648871776188865
Q ss_pred CCCCCCCC---CCCEECCCCCH---HHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHH
Q ss_conf 14321101---22200121786---7877416952663233587021378887611465231000477899999999999
Q gi|254780525|r 322 DDGTRVPI---YRLAIATVPSE---DNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEA 395 (421)
Q Consensus 322 ~~~~~~~~---~~~~~~~~~n~---~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~ 395 (421)
........ ..+++-+ ..+ +.|.+.-+++|......+.--=+.......-+|..+.||.||||.=|||++||..
T Consensus 149 ~G~~~~~~~~vgrlKLV~-P~~qPR~~l~kg~DGLfR~~~~~~~~pG~~~~aD~~v~v~~g~LEgSNVnav~emv~mI~l 227 (254)
T TIGR02490 149 PGDPPNAVQEVGRLKLVK-PDPQPRNQLQKGEDGLFRVKDQAGTDPGGPAAADESVRVVSGALEGSNVNAVEEMVSMISL 227 (254)
T ss_pred CCCCCCCHHHCCCCCCCC-CCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 888975232403223458-7877355242588842333687777889865668863450685547775288999999987
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780525|r 396 QRNYAVNSKVFQTGSDFMD 414 (421)
Q Consensus 396 Q~aYqAsArvItt~demld 414 (421)
+|-|+..-|||.|++|+=+
T Consensus 228 ~RqFE~Q~Kmm~tA~~na~ 246 (254)
T TIGR02490 228 SRQFEMQVKMMKTAEDNAQ 246 (254)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 5346778899987878899
No 40
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=99.67 E-value=9.7e-16 Score=117.92 Aligned_cols=68 Identities=29% Similarity=0.476 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------142200246543047777631220588578863
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~ 68 (421)
||||.+|+|+.|||.|++..|+++++||||++|.+ |.|++++|.+...........+.||+|..|.+.
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vvf~~~~~~~~~~~~~~~gV~v~~i~~d 74 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVVFAAFGSAELDRGQGTGGVKVAKIVED 74 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 95388899999999999999999998553267778999987643124553033100024678776588777438
No 41
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=99.64 E-value=4e-16 Score=120.40 Aligned_cols=121 Identities=23% Similarity=0.326 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHH
Q ss_conf 45889999999999998637887753027786714220024654304777763122058857886303411121483022
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTD 82 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d 82 (421)
|-++|++|+|||.+.+.+++|++|||||+||+||+|+...+.+.+....+ ......+........+.||.++.|++.+|
T Consensus 1 Mdr~iYtA~sg~~~~~~~~~viaNNLANvnT~GFK~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~d~~qG~l~~Tg~~LD 79 (209)
T PRK12643 1 MDHAIYTAMGAARQSLELQAVTANNLANASTPGFRAQLAAMRAVPIDGPS-LATRTMVTTSTPGVDISQGTMNFSGRPLD 79 (209)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHCCCCCCCC-CCCCCEEEECCCCEECCCCCEEECCCCEE
T ss_conf 92689999999999999888998887747876443104534231224777-65331133046504616757351598303
Q ss_pred HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHH
Q ss_conf 1103666201017988256420112221236720145562011
Q gi|254780525|r 83 LAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLL 125 (421)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 125 (421)
.|+.++++|....+.+...+++...|..+.++.| +..+....
T Consensus 80 lAI~G~GfF~V~~~~G~~aYTR~G~f~vd~~G~L-t~~G~~Vl 121 (209)
T PRK12643 80 VALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLM 121 (209)
T ss_pred EEEECCCEEEEECCCCCEEEEECCCEEECCCCCE-EECCCEEE
T ss_conf 9980895899985899567887887159999879-76985821
No 42
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.53 E-value=3.2e-13 Score=101.88 Aligned_cols=46 Identities=35% Similarity=0.478 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCCCCCEEHHHH
Q ss_conf 944588999999999999863788775302778------6714220024654
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDT------VGYKRTAIAFSSL 46 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT------~GYsRq~~~~~~~ 46 (421)
||+|.+|.|+.|||.|++..|++++.||||++| +-|.|++++|.+.
T Consensus 1 Ms~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~~g~~Yr~k~~vf~~~ 52 (138)
T PRK12631 1 MSLFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSSVDKTYRARHPIFEAE 52 (138)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHH
T ss_conf 9626678699999999999999999877634767889999873122111355
No 43
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=99.35 E-value=4.2e-11 Score=88.36 Aligned_cols=110 Identities=26% Similarity=0.325 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHH
Q ss_conf 58899999999999986378877530277867142200246543047777631220588578863034111214830221
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDL 83 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~ 83 (421)
=.+|++|++|-.-.=.+..++++|+||+.||||.+|-.-+.+++....+.- .-.=|.....--.+.+|.+.+|++.+|.
T Consensus 2 D~aiy~aM~aA~Q~l~~qa~~ANNLAN~STtGFraql~a~rav~v~g~~~p-trt~~~~s~pg~d~spG~l~~TgR~LDv 80 (251)
T COG4787 2 DHAIYTAMGAASQLLEQQAVTANNLANASTTGFRAQLNAARAVQVHGDSLP-TRTFVMASTPGTDMSPGSLDYTGRPLDV 80 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCC-HHEEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 237898878888889988877514213566317899988630124688752-0103541467656788610136885307
Q ss_pred HHCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 1036662010179882564201122212367
Q gi|254780525|r 84 AIQGKGFFIVKGRDNVNCLTRAGDFHINNEG 114 (421)
Q Consensus 84 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (421)
++.+.+|+.....+|...+++...+..+..+
T Consensus 81 aiq~DGwlaVq~~dG~EaYTRnG~~qI~a~g 111 (251)
T COG4787 81 AIQGDGWLAVQDADGSEAYTRNGNIQIDATG 111 (251)
T ss_pred EECCCCEEEEECCCCCCHHEECCCEEECCCC
T ss_conf 9736856999868875011115746787654
No 44
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.12 E-value=8.6e-11 Score=86.41 Aligned_cols=46 Identities=33% Similarity=0.554 Sum_probs=41.7
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3100047789999999999999999999999999999999975129
Q gi|254780525|r 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 376 ~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
|.+..++||+-|||++||.-+|+|+||..+|.+..+|+...|.|.|
T Consensus 84 GyV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i~r 129 (130)
T PRK12632 84 GYYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129 (130)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7736899788999999999999999999999999999999999842
No 45
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.06 E-value=2.8e-10 Score=83.16 Aligned_cols=39 Identities=46% Similarity=0.764 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 477899999999999999999999999999999999751
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
||||+++||++||.+||+|+|++|+|+++|||++++|++
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763
No 46
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.06 E-value=3.4e-10 Score=82.59 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHH
Q ss_conf 94458899999999999986378877530277867------142200246543
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLV 47 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~ 47 (421)
|||+.+|+|+.|||.|++..|++++.|||||+|.+ |.|+.++|.+..
T Consensus 1 M~l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~~~Y~~k~~vf~~~~ 53 (140)
T PRK12628 1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPVFKSVQ 53 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf 96077888999999999999999999886368888899973353130134466
No 47
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=99.02 E-value=8.4e-10 Score=80.07 Aligned_cols=47 Identities=30% Similarity=0.517 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCCEEHHHHH
Q ss_conf 9445889999999999998637887753027786------7142200246543
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTV------GYKRTAIAFSSLV 47 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~------GYsRq~~~~~~~~ 47 (421)
||||.+|.|+.|||.|++..|++++.|||||+|. -|.|+.++|++..
T Consensus 1 M~~~~~~~Ia~sgl~Aqr~Rl~~ia~NiANa~tt~~~~g~pYrrk~~vf~~~~ 53 (143)
T PRK12630 1 MKAFDSMRISASGLSAERLRMDTIASNISNASTTRTANGGPYRRKIAVFQENL 53 (143)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 97255786999999999999999998765358889999986644411254766
No 48
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.98 E-value=1.2e-09 Score=79.14 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3100047789999999999999999999999999999999975129
Q gi|254780525|r 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 376 ~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
+.+..++||+-+||++||.-+|+|+||..+|.+..+|+...|.|.|
T Consensus 95 GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~IGk 140 (141)
T PRK06802 95 GYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLKLGE 140 (141)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8884689898999999999999999999999999999999998637
No 49
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=98.91 E-value=2.2e-09 Score=77.47 Aligned_cols=68 Identities=31% Similarity=0.442 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------1422002465430477776312205885788630
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~ 69 (421)
||+|.+|+|+-|||.|++..|+|++.|||||.|.+ |.|++++|++........ .-+.||+|..|.+..
T Consensus 1 msl~~~~niagS~l~AQ~~RmnvissNiANa~St~~~~g~pYrrk~vvF~~~~~~~~~~-~~~~~VkV~~I~eD~ 74 (137)
T COG1558 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQVVFSAELFAPTGA-TGGAGVKVSKIVEDP 74 (137)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC-CCCCCEEEEEEEECC
T ss_conf 92165652554777888999899876430354456899984375456765513454445-788635898876069
No 50
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.91 E-value=3e-09 Score=76.58 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=41.2
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3100047789999999999999999999999999999999975129
Q gi|254780525|r 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 376 ~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
|.+..++||+-+||++||.-+|+|+||..+|.+..+|+...|.|.|
T Consensus 90 GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr 135 (135)
T PRK12629 90 GYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135 (135)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8884689888999999999999999999999999999999998559
No 51
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.89 E-value=3.1e-09 Score=76.44 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=42.2
Q ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3100047789999999999999999999999999999999975129
Q gi|254780525|r 376 GALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 376 ~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
|.+..++||+.+||++||.-+|+||||..+|.+..+|+...|.|-|
T Consensus 92 GyV~~pnVn~~~EMvdm~~AsRsYeANv~v~~tak~m~~~tL~i~r 137 (138)
T PRK12782 92 GYVKLPNVNMLIEMADMREANRSYEANLQVIKQARAMVSMTIDLLR 137 (138)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8854689888999999999999999999999999999999999850
No 52
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=98.53 E-value=8e-08 Score=67.49 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC---C--CCCCCEEHHHH----HHCC------CCCCCCCCCEEEEEE
Q ss_conf 58899999999999986378877530277---86---7--14220024654----3047------777631220588578
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANVD---TV---G--YKRTAIAFSSL----VFPS------TSNSYVSGGLEISTK 65 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANan---T~---G--YsRq~~~~~~~----~~~~------~~~~~~G~GV~v~~i 65 (421)
|++|+|+-|||.|++.-|+|+|.|||||+ |+ | |.||+++|.+. ++.. ......+.||+|..|
T Consensus 1 ~~~f~v~asaL~AQ~~Rmnv~ssNlANA~s~~~~q~~g~pyrr~~~vF~~~~~~~~~~~~~~~~~~~~~~~~~~V~V~~v 80 (147)
T TIGR01395 1 LSIFNVSASALSAQRVRMNVVSSNLANADSTRTPQAEGDPYRRRRPVFEAEVNKEPLSKILYSSDEVSGGAISGVKVAKV 80 (147)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCEEEEE
T ss_conf 95203454467777767766553220333435778888654684015876664755566775630004789775245542
Q ss_pred EEEEC
Q ss_conf 86303
Q gi|254780525|r 66 DMISE 70 (421)
Q Consensus 66 ~r~~~ 70 (421)
.+...
T Consensus 81 ~~d~~ 85 (147)
T TIGR01395 81 VEDDS 85 (147)
T ss_pred EECCC
T ss_conf 22688
No 53
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.51 E-value=1.4e-07 Score=65.85 Aligned_cols=47 Identities=40% Similarity=0.549 Sum_probs=43.1
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHH
Q ss_conf 9445-8899999999999986378877530277867142200246543
Q gi|254780525|r 1 MGIL-GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLV 47 (421)
Q Consensus 1 MSl~-~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~ 47 (421)
|+|| .++.+-..+|-+...--+|+++|||||+||||+|+.+.|.+.+
T Consensus 1 ~~lF~~ti~ll~kaLd~~~~Rq~via~NIANadTPgYK~~dv~Fe~~L 48 (135)
T PRK12622 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANVDTPNFKRSKVTFESEL 48 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 952788999999998899999999985010278999752407699999
No 54
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.45 E-value=2.2e-07 Score=64.64 Aligned_cols=51 Identities=29% Similarity=0.365 Sum_probs=43.8
Q ss_pred CHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC
Q ss_conf 4458-89999999999998637887753027786714220024654304777
Q gi|254780525|r 2 GILG-SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS 52 (421)
Q Consensus 2 Sl~~-~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~ 52 (421)
|||. .|++-..+|.+...--+|.++|||||+||||+|+.+.|.+.+....+
T Consensus 3 ~~f~~~i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv~Fe~~L~~a~~ 54 (136)
T PRK12621 3 SLYEPHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPRELEFEKQLQSALG 54 (136)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 2478799999999999999999999713205899987441878999999876
No 55
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.43 E-value=5.6e-07 Score=62.08 Aligned_cols=64 Identities=31% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867142200246543047777631220588578863
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMI 68 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~ 68 (421)
|.++.+|+|+.|||.|++..|++++.|||||+||+|.|+.+.|++.+... ....||+|..|...
T Consensus 2 ~d~~~~~~Ia~Sgl~Aq~~Rl~~iA~NiANa~t~~y~~k~v~f~~~~~~~----~~~~~v~v~~v~~d 65 (130)
T PRK12632 2 TDFSKSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEERDFG----DGVGLVSTGPVRLD 65 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCC----CCCCCEEECCEECC
T ss_conf 03889999999999999999999998743368876433444000124556----78775475350227
No 56
>PRK12782 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.40 E-value=7.3e-07 Score=61.34 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867-------1422002465430477776312205885788630
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG-------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G-------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~ 69 (421)
|+|+.+|.|+.|||.|++..|++++.||||++|.+ |.|+.+.|.+...... -+.||+|..|....
T Consensus 3 ~~L~~~~~Ia~sgm~Aq~~Rl~~iAsNlANa~st~~~~~~~py~~k~v~f~~~~~~~~----~~~gV~v~~i~~d~ 74 (138)
T PRK12782 3 DPLQASLRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYQRKTVTFRAELDRAA----GAALVRVKEIGVDT 74 (138)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHCCCC----CCCCEEEEEEECCC
T ss_conf 0789999999999999999999999877424667879888764013223413103446----77741341334389
No 57
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.40 E-value=2.8e-07 Score=64.00 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCC
Q ss_conf 4588999999999999863788775302778671422002465430477
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPST 51 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~ 51 (421)
+...|.+-..+|.+.....+|+++|||||+||||+++.+.|.+.+....
T Consensus 5 ~~~~~~~l~~aLd~~~~Rq~via~NIANadTPgYKa~dv~Fe~~L~~a~ 53 (137)
T PRK05680 5 FDKALGFQQEALNLRAQRQEVIANNIANADTPGYKARDIDFESVLAKAM 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999999999999999860202689998866277999999998
No 58
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.40 E-value=3.8e-07 Score=63.20 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=42.0
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHH
Q ss_conf 94--4588999999999999863788775302778671422002465430
Q gi|254780525|r 1 MG--ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF 48 (421)
Q Consensus 1 MS--l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~ 48 (421)
|+ +-..|.+--.+|.....--+|.++|||||+||||+|+.++|...+-
T Consensus 1 m~~~fd~~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl~Fe~~L~ 50 (132)
T PRK12625 1 MAINFDKALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDVDFSAAMQ 50 (132)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 96548888617899999999999999871430689998865388999999
No 59
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.40 E-value=4e-07 Score=63.03 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC
Q ss_conf 45889999999999998637887753027786714220024654304777
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS 52 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~ 52 (421)
+-.+|.+--.+|.....-.+|.++|||||+||||+|+.+.|...+.....
T Consensus 5 ~d~~~gi~~~aL~~r~~Rq~via~NIANadTPgYKakdv~Fe~~L~~a~~ 54 (130)
T PRK12619 5 LDSYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVLTATMA 54 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 88786677999999999999998623216899986444889999999873
No 60
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.33 E-value=6.5e-07 Score=61.70 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 889999999999998637887753027786714220024654304
Q gi|254780525|r 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 5 ~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
..+++-..+|-+...--+|+++|||||+||||+|+.|+|.+.+-.
T Consensus 9 kT~~lL~kaLd~~~~Rq~vIa~NIAN~dTPgYK~~dv~Fe~~L~~ 53 (143)
T PRK12624 9 KTQDLLERGMNNSIQKRKVISDNIANADVPHFKRSEVIFESMIKR 53 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 699999999999999999998601126899976320629999999
No 61
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=98.33 E-value=7.6e-07 Score=61.23 Aligned_cols=52 Identities=29% Similarity=0.429 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCC
Q ss_conf 9445889999999999998637887753027786714220024654304777
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTS 52 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~ 52 (421)
|+...+|......|.-....-+|++.|||||+||||.|+.+.|.+.+-....
T Consensus 2 ~~~~~~~~l~~~al~~~~~Rq~via~NIANadTP~yKa~dv~Fe~~L~~~~~ 53 (133)
T COG1815 2 MSFDRAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDVDFESVLKKALA 53 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 6478999999999889999999998531027999987444758999999872
No 62
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.33 E-value=6.3e-07 Score=61.76 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 45889999999999998637887753027786714220024654304
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
+...|.+--.+|.......+|.++|||||+||||+++.+.|......
T Consensus 5 ~d~~~~~~~~aLd~~~~Rq~via~NIANadTPgYKakdl~F~~~l~~ 51 (116)
T PRK12685 5 LDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDLDFKAVMSQ 51 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 89886578999999999999998603316899987665889999999
No 63
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.33 E-value=6.4e-07 Score=61.74 Aligned_cols=44 Identities=36% Similarity=0.500 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 89999999999998637887753027786714220024654304
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
.+..-.++|.+...--+|+++|||||+||||+|+.+.|.+.+..
T Consensus 12 tf~ll~~aLd~~~~Rq~vIa~NIANadTPgYKa~dv~Fe~~L~~ 55 (131)
T PRK12623 12 TYDLLKKGLDASSYRGKVISNNIANVNTKDYKRHYVTFEETLKD 55 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999999999999998603216899987655869999987
No 64
>TIGR01395 FlgC flagellar basal-body rod protein FlgC; InterPro: IPR006299 These sequences represent FlgC, one of several components of bacterial flagella. FlgC is part of the basal body. ; GO: 0019861 flagellum.
Probab=98.31 E-value=8.4e-07 Score=60.97 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=43.4
Q ss_pred ECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 23100047789999999999999999999999999999999975129
Q gi|254780525|r 375 SGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 375 ~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
.|.+...|||+.+||++||.=+|+||||-++|++..+|+..-|.|.|
T Consensus 101 ~GYV~~PNVn~~~EMVdmi~A~RsYeANv~v~~~~K~m~~~tL~~~~ 147 (147)
T TIGR01395 101 EGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMLLRTLEIGR 147 (147)
T ss_pred CCCEECCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78470585585432321120024788999999999999999999709
No 65
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.30 E-value=8.9e-07 Score=60.81 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=42.0
Q ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCC
Q ss_conf 94--458899999999999986378877530277867142200246543047
Q gi|254780525|r 1 MG--ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPS 50 (421)
Q Consensus 1 MS--l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~ 50 (421)
|+ +-.+|.+--.+|....+-.+|+++|||||+||||+++.+.|...+...
T Consensus 1 M~~~fd~~~~~~~~aL~lr~~Rq~viasNIANadTPgYKardv~Fe~~L~~a 52 (132)
T PRK12620 1 MSSPFTSFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDLNFEAALKSA 52 (132)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9534887862889999999999999986022168999876658789999998
No 66
>pfam00460 Flg_bb_rod Flagella basal body rod protein.
Probab=98.29 E-value=3.7e-07 Score=63.24 Aligned_cols=31 Identities=42% Similarity=0.667 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999998637887753027786714
Q gi|254780525|r 7 MKTAMSGMDAQSNRVSAVSDNIANVDTVGYK 37 (421)
Q Consensus 7 l~~a~SGL~A~q~al~vts~NIANanT~GYs 37 (421)
|.++.|+|.+.|.+++|+++||||++||||+
T Consensus 1 l~~a~sal~a~~~~l~vianNiAN~nT~G~k 31 (31)
T pfam00460 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 (31)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9138876508999999998610245576789
No 67
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed
Probab=98.28 E-value=2.3e-06 Score=58.22 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCC---CCCCCCCCEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------1422002465430477---7763122058857886
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPST---SNSYVSGGLEISTKDM 67 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~---~~~~~G~GV~v~~i~r 67 (421)
||+|.+|.|+.|||.|++..|++++.||||++|.+ |.|++++|.+...... +.+..|.+|++..|..
T Consensus 1 Ms~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~g~~y~~k~~vf~~~~~~~~~~~~~~~~~~~V~v~~i~~ 76 (141)
T PRK06802 1 MSFNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATVYKARSPVFSAVYSARTAADPRGVQSAQVQVLDVVE 76 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEC
T ss_conf 9607788899999999999999999988726888989998663433324565534431135577886258875435
No 68
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.25 E-value=2.9e-06 Score=57.56 Aligned_cols=66 Identities=26% Similarity=0.283 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 94458899999999999986378877530277867------1422002465430477776312205885788630
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG------YKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMIS 69 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~G------YsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~ 69 (421)
||+|.+|.|+.|||.|++..|++++.||||++|.. |.|++++|.+...... ....||+|..|.+..
T Consensus 1 Ms~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~~~~~yr~~~~vf~~~~~~~~---~~~~~V~v~~i~~d~ 72 (135)
T PRK12629 1 MSNLPIFDVAGSALHAQSVRLSTIASNLANADSVAGSAEATYKPIEPIFQAQQSRQD---PSLTSVNVKEITTTN 72 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCC---CCCCCEEEEEEECCC
T ss_conf 963657769999899999999999998774688898999877640112564432457---887866777754379
No 69
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=98.17 E-value=2.5e-06 Score=57.93 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE-HHHHHH
Q ss_conf 944588999999999999863788775302778671422002-465430
Q gi|254780525|r 1 MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIA-FSSLVF 48 (421)
Q Consensus 1 MSl~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~-~~~~~~ 48 (421)
|+=...|..+.+-|.....--+|+++|||||+||||.++.+. |.+..-
T Consensus 1 m~~l~lf~la~~~~~~~~~Rq~viA~NIANadTPgYkarDv~~Fe~~l~ 49 (126)
T PRK06003 1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVEPFADVLD 49 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 9711599999999899999999999722027999986122537999986
No 70
>PRK12630 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.16 E-value=5.8e-06 Score=55.62 Aligned_cols=48 Identities=15% Similarity=0.402 Sum_probs=44.2
Q ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 523100047789999999999999999999999999999999975129
Q gi|254780525|r 374 FSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 374 ~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
..+.+...+||+-+||++||.-+|+|+||-.+|.+..+|+...|.|.|
T Consensus 96 ~~GyV~~PnVd~~~EMvdm~~AsRsYEANv~v~~~aK~m~~~tL~igk 143 (143)
T PRK12630 96 EEGYVSMPNVNVLNEMADMMASTRSYEANVTAMNAEKSMFSKALEIGK 143 (143)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 798884689888999999999999999999999999999999998559
No 71
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional
Probab=98.10 E-value=2.6e-06 Score=57.80 Aligned_cols=47 Identities=28% Similarity=0.422 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 45889999999999998637887753027786714220024654304
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
|-..|.+-...|.-...-.+|.+.|||||+||||+++.++|.+.+-.
T Consensus 5 ld~~~~~~~~AL~lR~~RqevlAsNIANadTPgYKArDldFe~~L~~ 51 (162)
T PRK12626 5 LDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDVDFASTLAR 51 (162)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 78773610999999999999998500137899986435879999999
No 72
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional
Probab=98.06 E-value=1.1e-05 Score=53.77 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=43.3
Q ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 52310004778999999999999999999999999999999997512
Q gi|254780525|r 374 FSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 374 ~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
.++.+..++||+-+||++||.-+|+|+||-.+|.+..+|+...|.|.
T Consensus 93 ~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~IG 139 (140)
T PRK12628 93 KDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQLG 139 (140)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89867348988899999999999999999999999999999998617
No 73
>PRK07182 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=97.96 E-value=8.5e-06 Score=54.57 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 45889999999999998637887753027786714220024654304
Q gi|254780525|r 3 ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 3 l~~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
+-.+|.+--..|.--..-.+|.+.|||||+||||+++.++|...+-.
T Consensus 5 f~~~lg~~~~aL~lR~~RqevlAsNIANaDTPgYKArDidF~~~L~~ 51 (148)
T PRK07182 5 FQKALGVHPMAMQLRLTRAELLSANLANVNTPNFQAKDIDFAAEMQR 51 (148)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 88673705999999999999998612216899986637888999999
No 74
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=97.94 E-value=3.7e-06 Score=56.86 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHH
Q ss_conf 99863788775302778671422002465430
Q gi|254780525|r 17 QSNRVSAVSDNIANVDTVGYKRTAIAFSSLVF 48 (421)
Q Consensus 17 ~q~al~vts~NIANanT~GYsRq~~~~~~~~~ 48 (421)
-+..-+|+++|||||+||||+++.+.|...+-
T Consensus 15 r~~Rq~viAsNIANadTPgYKarDv~Fe~~L~ 46 (135)
T PRK06797 15 LVTKRNTVSSNIANANTPGYKAQDVTFAEQMN 46 (135)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999999861024789998643387999999
No 75
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=97.91 E-value=9.5e-06 Score=54.26 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE---EHHHHH
Q ss_conf 9999999986378877530277867142200---246543
Q gi|254780525|r 11 MSGMDAQSNRVSAVSDNIANVDTVGYKRTAI---AFSSLV 47 (421)
Q Consensus 11 ~SGL~A~q~al~vts~NIANanT~GYsRq~~---~~~~~~ 47 (421)
...|.-.+.--+|+++|||||+||||+++.+ .|....
T Consensus 3 ~~~m~~~~~Rq~via~NIANadTPgYkarDl~~~~F~~~l 42 (126)
T PRK06004 3 RTRMQWHQERQKVLAENVANSDTPGFRPRDLVEPKFDATG 42 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8888799999999997244068999883236525199999
No 76
>COG1558 FlgC Flagellar basal body rod protein [Cell motility and secretion]
Probab=97.89 E-value=4e-05 Score=50.29 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=44.1
Q ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 523100047789999999999999999999999999999999975129
Q gi|254780525|r 374 FSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 374 ~~~~le~SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
..+.++..+||+=+||++||.-+|+||||-.+|.+..+|+...|.|-|
T Consensus 90 ~~GYV~~PNVn~v~EM~dmisAsRsYeANv~v~~~~K~m~~~tL~i~~ 137 (137)
T COG1558 90 AKGYVKMPNVNVVIEMVDMISASRSYEANVEVLNTAKSMMQKTLELGQ 137 (137)
T ss_pred CCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 367556587658999999999999899999999999999999997519
No 77
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=97.76 E-value=4.7e-05 Score=49.81 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE-EHHHHH
Q ss_conf 899999999999986378877530277867142200-246543
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAI-AFSSLV 47 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~-~~~~~~ 47 (421)
.|..+..=|.-...--+|+++|||||+||||.++.+ .|....
T Consensus 7 lf~l~~~~~~~la~Rq~ViA~NIANADTPgYkarDl~~F~~~l 49 (128)
T PRK12627 7 IFRMASAMARHAGERQAVIAQNVANADTPGYRARDLADFAETY 49 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHH
T ss_conf 9999999999999999999974103799998500004199999
No 78
>PRK12627 flgB flagellar basal body rod protein FlgB; Provisional
Probab=95.98 E-value=0.019 Score=33.20 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999999975
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLln 418 (421)
-+|+||+||+++-+-|..||++.++++--=.||.+.|+
T Consensus 89 N~V~le~Em~~~aen~~~Y~~~~~~~~~~~~~lrtAiG 126 (128)
T PRK12627 89 NSVSLEEEMLRSAEAKRQHDRALAIYKSSMSLLRTSLG 126 (128)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 83559999999999999999999999999999999867
No 79
>PRK06003 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.76 E-value=0.028 Score=32.10 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778999999999999999999999999999999997
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
+|+|||||++|-+-+..|+++..++..-=.||-+.|
T Consensus 89 ~V~le~Em~~~aen~~~Y~~~~~l~~~~~~ml~~Ai 124 (126)
T PRK06003 89 SVSLEQEMMKAGEINRDYSLNTAIVKSFHRMMLMTV 124 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 457999999999999999999999999999999986
No 80
>PRK06004 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.73 E-value=0.029 Score=32.08 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999999975
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLln 418 (421)
=+|+||+||++|.+-|..|+++.+++.--=.||-+.|+
T Consensus 87 N~Vdle~Em~~~aen~~~Y~~~~~~~~~~~~~l~~AIg 124 (126)
T PRK06004 87 NAVNLEDEMLKVSDNQMDYAAATSLYQKSLGLLKTAIG 124 (126)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 81469999999999999999999999999999999975
No 81
>PRK12622 flgB flagellar basal body rod protein FlgB; Provisional
Probab=95.44 E-value=0.044 Score=30.92 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778999999999999999999999999999999997
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
+|++|+||+.|.+-|-.|+|..++++--=++|.+.|
T Consensus 99 nVDid~Em~~la~N~l~Y~al~~~l~~~f~~l~~vI 134 (135)
T PRK12622 99 NVDIDSEMKALVQNQMMYHLFTNIQAHHFKSVNIVI 134 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 758899999999999999999999998999999985
No 82
>PRK12623 flgB flagellar basal body rod protein FlgB; Provisional
Probab=95.25 E-value=0.051 Score=30.51 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999999975
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLln 418 (421)
=+|++|+||+.|.+-|-.|+|..++++-==.+|.+.|+
T Consensus 94 NnVDid~Em~~laeN~l~Y~a~~~~l~~k~~~lk~aI~ 131 (131)
T PRK12623 94 NNVDIDNEMVNQAANTLMYNALITQLNNRLATTRYIIN 131 (131)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 86779999999999999999999999989999998629
No 83
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=95.24 E-value=0.061 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4778999999999999999999999999999999997512
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
-+|++|+||++|.+-|-.|||..++|+--=.+|.+.|.=.
T Consensus 97 N~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~gG 136 (137)
T PRK05680 97 NTVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQGG 136 (137)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8608799999999999999999999999999999998657
No 84
>COG1815 FlgB Flagellar basal body protein [Cell motility and secretion]
Probab=95.21 E-value=0.055 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999999975
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLln 418 (421)
=.|++|.||+++.+-+..||++..++.--=.||-..|.
T Consensus 94 NtVdld~E~~~~~kN~~~Yq~~~~~l~~~~~~~~~vl~ 131 (133)
T COG1815 94 NTVDLDREMTEFAKNQLMYQALLSFLKSQIKMLNSVLK 131 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 70438999999999999999999999999999999971
No 85
>PRK12624 flgB flagellar basal body rod protein FlgB; Provisional
Probab=94.88 E-value=0.078 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 477899999999999999999999999999999999751
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
=+||+|+||++|.+-|-.|+|..+.|+-==.+|.++|.+
T Consensus 104 NnVDid~Em~~la~N~l~Y~al~~~l~~~~~~lr~vIk~ 142 (143)
T PRK12624 104 NNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMRM 142 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 726899999999999999999999999789999999736
No 86
>TIGR01396 FlgB flagellar basal-body rod protein FlgB; InterPro: IPR006300 Many bacterial species swim actively by means of flagella. The flagella organelle is made of three parts: the basal body, the hook and the filament. The basal body consists of four rings (L,P,S, and M) mounted on a central rod . In Salmonella typhimurium and related organisms the rod has been shown to consist of four different, yet evolutionary related proteins: in the distal portion of the rod there are about 26 subunits of protein flgG and in the proximal portion there are about six subunits each of proteins flgB, flgC, and flgF. These four proteins contain a highly conserved asparagine-rich domain at their N terminus. These sequences represent FlgB, one of several components of bacterial flagella. FlgB is part of the basal body.; GO: 0019861 flagellum.
Probab=94.00 E-value=0.056 Score=30.21 Aligned_cols=45 Identities=29% Similarity=0.431 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHC
Q ss_conf 889999999999998637887753027786714220024654304
Q gi|254780525|r 5 GSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFP 49 (421)
Q Consensus 5 ~~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~ 49 (421)
..+.....+|......-++.+.||||+.||||.+..+.|......
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~~~l~~ 47 (134)
T TIGR01396 3 RALGLLQKALDLRSLRQEVLANNIANADTPGYKAKDLSFEAELKK 47 (134)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHH
T ss_conf 104467777657777666665431003566531011027888888
No 87
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=94.00 E-value=0.17 Score=27.22 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4778999999999999999999999999999999997
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
-+|++|+||++|.+-|-.|+|..++|+--=.+|.+.|
T Consensus 77 N~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI 113 (116)
T PRK12685 77 NTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAI 113 (116)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8537899999999999999999999999999999986
No 88
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional
Probab=93.95 E-value=0.16 Score=27.26 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 778999999999999999999999999999999997
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
+|++|+||++|.+-|-.|+|..++|.-==.+|.+.|
T Consensus 94 ~Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l~~aI 129 (132)
T PRK12625 94 TVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKAL 129 (132)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 114799999999999999999999999999999987
No 89
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional
Probab=93.95 E-value=0.19 Score=26.84 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999999999999999999999999999999751
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
+|++|+||++|.+=|=.|+|..++|+-==.+|.+.|.=
T Consensus 96 ~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~ 133 (136)
T PRK12621 96 RVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIME 133 (136)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76548999999999999999999999999999999983
No 90
>PRK12619 flgB flagellar basal body rod protein FlgB; Provisional
Probab=93.33 E-value=0.25 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4778999999999999999999999999999999997
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
-+|++|.||++|.+-|=.|||..++|+-==.+|.+.|
T Consensus 91 NtVDid~Ema~~a~N~l~Yqa~~~~l~~k~~~l~~aI 127 (130)
T PRK12619 91 NTVDKDMETTEFARNALNYQASLSFLNGKIKSMLTAL 127 (130)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7425799999999999999999999999999999986
No 91
>PRK12620 flgB flagellar basal body rod protein FlgB; Provisional
Probab=93.32 E-value=0.25 Score=26.12 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4778999999999999999999999999999999997
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILI 417 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLl 417 (421)
=+|++|+||++|.+-+-.|||..++|.--=.+|.+.|
T Consensus 93 NtVd~d~Em~~~aeN~l~Y~a~~~~l~~ki~~l~~AI 129 (132)
T PRK12620 93 NTVDPDAERAAYGRAALEYRASLSFLESKVRSMLTAI 129 (132)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8506699999999999999999999999999999986
No 92
>PRK06797 flgB flagellar basal body rod protein FlgB; Reviewed
Probab=92.52 E-value=0.19 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789999999999999999999999999999999
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDI 415 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldt 415 (421)
.|++|.||+.|.+=|-.|||+-.+|.-=-.|+..
T Consensus 98 tVD~d~Em~~~a~N~l~Yqas~~~Ln~k~sl~~A 131 (135)
T PRK06797 98 SVDVTTEMLDLMKANQLYGISINAINTQYAINQA 131 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 5578999999999999999999998255418888
No 93
>PRK12804 flagellin; Provisional
Probab=91.98 E-value=0.44 Score=24.53 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-||+-||+++|-+.|=-|||+-.++.-++++-+.+|.|.|
T Consensus 268 DaD~A~e~~~l~~~qi~~Qaa~a~laqAN~~~q~~L~Ll~ 307 (307)
T PRK12804 268 DVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 307 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0069999999999999999999999998266899998519
No 94
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=91.43 E-value=0.6 Score=23.68 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
.||+-||+++|.++|..|||+.+++.-+..+=.-.+.+-|
T Consensus 321 D~D~aee~t~l~~~q~~~Qas~~~laqan~~s~~~l~ll~ 360 (360)
T COG1344 321 DVDMAEESTELTKLQILQQASLQALAQANQLSLLVLSLLR 360 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7769999999999999999999999999860288897359
No 95
>pfam07559 FlaE Flagellar basal body protein FlaE. This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.
Probab=89.46 E-value=1.2 Score=21.65 Aligned_cols=63 Identities=30% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 7654322210367540688736778762135555420477630444446566664432100122024
Q gi|254780525|r 185 GRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDP 251 (421)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (421)
.....+.+...+.++|.+|+.|.+.+++.+...+.|............. .........+.|+.
T Consensus 4 ~~~~ty~~~ts~tvYDSlG~~h~l~~~f~Kt~~n~W~v~~~~~~~~~~~----~~~~~~~~~l~Fd~ 66 (117)
T pfam07559 4 ADPATYNHSTSVTVYDSLGNKHTLTVYFVKTGDNTWTVYVTVDGTPGGG----TATAPATGTLTFDS 66 (117)
T ss_pred CCCCCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCC----CCCCCCEEEEEECC
T ss_conf 8887513211189997899859999999987898299999758876566----76666318999779
No 96
>PRK12802 flagellin; Provisional
Probab=89.40 E-value=1.1 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-||+-+|+++|-+.|--|||+-.++.-++++=+.+|.|.|
T Consensus 243 DaD~A~e~~~l~~~qi~~Qaa~a~laqANq~~q~vl~Llq 282 (282)
T PRK12802 243 DTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282 (282)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0059999999999999999999999999676899998509
No 97
>PRK12807 flagellin; Provisional
Probab=89.23 E-value=1.2 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-||+-||.++|.+.|=-|||+.-+++-++.+=+.+|.|.|
T Consensus 248 DaD~A~e~~~l~~~qil~Qaa~a~lsqAN~~~q~vL~Llq 287 (287)
T PRK12807 248 DADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1049999999999999999999999998467899998509
No 98
>pfam00700 Flagellin_C Bacterial flagellin C-terminal helical region. Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.
Probab=87.86 E-value=1.4 Score=21.29 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999999999999999999999999999999751
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
.||+-||+++|.+.|--|||+.-++.=+++| .|||+
T Consensus 48 D~D~Aee~t~l~~~qil~qas~a~~aqanql--slln~ 83 (84)
T pfam00700 48 DVDPAEASTRVTKLQILLQASYALTAQANQL--SLLNL 83 (84)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 6509999999999999999999999998678--88864
No 99
>PRK08869 flagellin; Reviewed
Probab=87.13 E-value=1.5 Score=21.11 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
=||+-||+++|-|.|--.||+.-++.-++++=+.+|.|.|
T Consensus 338 DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 377 (377)
T PRK08869 338 DTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 377 (377)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 1319999999999999999999999997317679998409
No 100
>PRK08412 flgL flagellar hook-associated protein FlgL; Validated
Probab=86.84 E-value=0.94 Score=22.43 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789999999999999999999999999999
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDF 412 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~dem 412 (421)
..|+-|||++++++|-+|||.=+.+.-+.+|
T Consensus 741 D~D~AE~mm~ft~l~~~yQAmLas~~kI~Ql 771 (777)
T PRK08412 741 GTDMAETYNKFSNLTNNYNAVLASTNKINQL 771 (777)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6079999999999999999999985311343
No 101
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=85.21 E-value=1.4 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999999975
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLln 418 (421)
-.||+-||+++|-+.|-.|||+.++..-+.+| +|++
T Consensus 366 ~DaD~ae~~t~l~~~q~~~qAa~~~~aqi~q~--SL~d 401 (403)
T PRK08870 366 EDLDYASAISEFEKQQAALQAAQQAFSKVQSL--SLFN 401 (403)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHH
T ss_conf 25479999999999999999999999988345--1762
No 102
>PRK06819 flagellin; Validated
Probab=84.58 E-value=1.9 Score=20.48 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+-||+++|-|.|=-.||+..++.-++++=+.+|.|.|
T Consensus 332 DaD~A~E~t~l~k~qil~Qa~~amLaqANq~~q~vL~Llq 371 (371)
T PRK06819 332 DADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 371 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 3039999999999999999999999997707789998509
No 103
>PRK07701 flgL flagellar hook-associated protein FlgL; Validated
Probab=83.58 E-value=2.3 Score=19.92 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47789999999999999999999999999999999975129
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-.||+-||+++|-+.|-+|||+-++..-+.+| +|++..|
T Consensus 263 ~D~D~a~a~~~l~~~q~~~qAa~~~~a~i~q~--SL~dylR 301 (301)
T PRK07701 263 EDVDLAEVITDLKTQENVYRAALAVGARIIQP--SLVDFLR 301 (301)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHCC
T ss_conf 55459999999999999999999999988356--0988709
No 104
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=80.03 E-value=2.7 Score=19.48 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7789999999999999999999999999999
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDF 412 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~dem 412 (421)
-||+-|||++|-+.|-.|||+-+++.-+.+|
T Consensus 487 D~D~Ae~~t~lt~~qil~qAa~s~~aqi~ql 517 (523)
T PRK12717 487 DSDPAEATTRLTLQQTMLEASQQAFVKISQL 517 (523)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3039999999999999999999999998574
No 105
>PRK12805 flagellin; Provisional
Probab=78.13 E-value=3.9 Score=18.46 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 778999999999999999999999999999999997512
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
-||+-+|+++|.+.|=-|||+.-++.-++++=+.+|.|.
T Consensus 247 DaD~A~e~~~l~k~qil~Qaa~amlaQAN~~pq~vL~Ll 285 (287)
T PRK12805 247 DADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285 (287)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 221999999999999999999999999832779999875
No 106
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=72.31 E-value=5.5 Score=17.52 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47789999999999999999999999999999999975129
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
..||+-|.+++|-+.|-+|||+-++.+-+.+| +|++..|
T Consensus 279 eD~D~aeaisel~~~q~alqAa~~~faki~~l--SLfd~lR 317 (317)
T PRK08027 279 VDVDWNSAISSYVMQQAALQASYKTFTDMQGM--SLFQLNR 317 (317)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHCC
T ss_conf 36589999999999999999999999998347--3987609
No 107
>PRK12803 flagellin; Provisional
Probab=70.89 E-value=6 Score=17.31 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+-+|+++|.|.|=-.||+.-|+.=++++=+.+|.|.|
T Consensus 296 DaD~A~E~~~ltk~qil~Qa~~amLaQAN~~pq~vL~LLq 335 (335)
T PRK12803 296 DATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLLR 335 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 3059999999999999999999999997617689998409
No 108
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=64.97 E-value=7.8 Score=16.55 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDF 412 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~dem 412 (421)
..||+-||+++|-+.|-+|||+-++..-+..|
T Consensus 268 ~d~D~a~a~t~l~~~q~~~qAs~~~~a~i~~l 299 (305)
T PRK07192 268 QDLDYAEAYTDLSNQMAALEATQKTFVKVNSL 299 (305)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 45579999999999999999999999988167
No 109
>pfam08956 DUF1869 Domain of unknown function (DUF1869). This domain is found in a set of hypothetical bacterial proteins.
Probab=64.43 E-value=1.9 Score=20.41 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47789999999999999999999999999999999975129
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-|||.|-|..-++.+ +.=.++-|+...|+||+|
T Consensus 14 NGVSVDk~~~t~~~L--------~dp~vaa~~vKdLvNiVR 46 (59)
T pfam08956 14 NGVSVDKEFSTLATL--------LDPEVAAEVVKDLVNIVR 46 (59)
T ss_pred CCEEECCCCCCHHHH--------CCHHHHHHHHHHHHHHHH
T ss_conf 865743444787887--------481879999999999873
No 110
>PRK12687 flagellin; Reviewed
Probab=61.61 E-value=9 Score=16.17 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+.+|+++|-++|===|+...++.-++++=+.+|.|-|
T Consensus 272 DADmA~Esa~l~k~QilqQag~amLaqANq~pQ~vLsLlr 311 (311)
T PRK12687 272 DADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLFK 311 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
T ss_conf 6659999999999999999999999998457599998619
No 111
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=61.50 E-value=9 Score=16.15 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 47789999999999999999999999999999999975129
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
.-+|+-||+++|.+.|-.|||+-++.+-+-. -+|++-.|
T Consensus 382 ~DaD~a~~it~l~~~~~~~qAa~~~~a~i~~--~SLfdyLr 420 (420)
T PRK06663 382 TDLDVTKAITNLKMLELAHQVSLGVSAKIMK--TTLLDFLR 420 (420)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHCC
T ss_conf 0523999999999999999999999998706--62887609
No 112
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=59.98 E-value=9.6 Score=15.99 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 47789999999999999999999999999999
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDF 412 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~dem 412 (421)
..||+-|++++|-+.|-+|||+-++.+-+.++
T Consensus 250 eD~D~Aeai~~l~~~~~~lqAal~~~aki~q~ 281 (287)
T PRK08073 250 EDVDLAVAISDLAYINATYEATLKAVSTMSKT 281 (287)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 55469999999999999999999999987055
No 113
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4; InterPro: IPR005273 This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The function of these proteins is unknown. .
Probab=40.38 E-value=17 Score=14.43 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999975129
Q gi|254780525|r 409 GSDFMDILISLKR 421 (421)
Q Consensus 409 ~demldtLlnl~R 421 (421)
.|+||..+|+|+|
T Consensus 50 Ld~lL~e~iGl~R 62 (185)
T TIGR00758 50 LDELLEEAIGLSR 62 (185)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999837443
No 114
>PRK12808 flagellin; Provisional
Probab=35.68 E-value=23 Score=13.55 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
=+|+-|||++|-|.|=-=||..-|+.=++++=+.+|.|-|
T Consensus 421 DaDmA~E~a~ltk~qILqQAgtamLAQANq~pq~vL~LLq 460 (460)
T PRK12808 421 DADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 460 (460)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 0659999999999999999999999996517478998419
No 115
>KOG4128 consensus
Probab=35.65 E-value=23 Score=13.55 Aligned_cols=10 Identities=10% Similarity=0.405 Sum_probs=3.9
Q ss_pred HHHHHHHHCC
Q ss_conf 7887753027
Q gi|254780525|r 22 SAVSDNIANV 31 (421)
Q Consensus 22 ~vts~NIANa 31 (421)
...++|+--+
T Consensus 24 ~~LAqnV~t~ 33 (457)
T KOG4128 24 NRLAQNVCTA 33 (457)
T ss_pred HHHHHHHCCC
T ss_conf 8999876101
No 116
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=35.16 E-value=24 Score=13.50 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+-|.+++|-+=|-+|||+-+...-+..| .|.|+.|
T Consensus 473 DlD~aeAis~l~~qq~~LQAaQqsF~ki~~L--SLFn~~r 510 (510)
T PRK12718 473 DVNIYQATSDLLLRQVALQAASLALQRIQGN--SLFSMGR 510 (510)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCC
T ss_conf 3689999999999999999999999998656--5111469
No 117
>pfam09392 MxiH Type III secretion needle MxiH like. Type III secretion systems are essential virulence determinants for many gram-negative bacterial pathogens. MxiH is an extracellular alpha helical needle that is required for translocation of effector proteins into host cells. Once inside, the effector proteins subvert normal cell function to aid infection.
Probab=34.26 E-value=24 Score=13.41 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999975
Q gi|254780525|r 392 LIEAQRNYAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 392 Li~~Q~aYqAsArvItt~demldtLln 418 (421)
|.+|==.|...+|++..+-+++++|++
T Consensus 43 l~~~sv~~~l~sk~v~~~~q~~~~L~k 69 (69)
T pfam09392 43 LSQYSLYVDLQSKVVGKVKQSLEKLVK 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998999887538899999999998739
No 118
>pfam10952 DUF2753 Protein of unknown function (DUF2753). This bacterial family of proteins has no known function.
Probab=32.35 E-value=26 Score=13.21 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999999999999999997512
Q gi|254780525|r 385 IASELTELIEAQRNYAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 385 lDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~ 420 (421)
.++-+...+-|||||.-+-+++....+=++.++-|+
T Consensus 14 ~~d~~~sIlhYQqAl~~s~~i~~~~~~~l~d~l~is 49 (140)
T pfam10952 14 NGDPLRSILHYQQALAESQELDESNEDELEDLLTIK 49 (140)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 576899999999999999986012155466645501
No 119
>PRK12806 flagellin; Provisional
Probab=32.26 E-value=26 Score=13.20 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77899999999999999999999999999999999751
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
=+|+-|||++|-|.|===||+.-|+.=++++=+.+|.|
T Consensus 435 DaDmA~E~s~ltk~qILqQA~~amLAQANq~pQ~VL~L 472 (475)
T PRK12806 435 DADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSL 472 (475)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 02299999999999999999999999965076899986
No 120
>pfam05299 Peptidase_M61 M61 glycyl aminopeptidase. Glycyl aminopeptidase is an unusual peptidase in that it has a preference for substrates with an N-terminal glycine or alanine. These proteins are found in Bacteria and in Archaea.
Probab=32.11 E-value=20 Score=13.97 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEHHH
Q ss_conf 5889999999999998637887753027-78671422002465
Q gi|254780525|r 4 LGSMKTAMSGMDAQSNRVSAVSDNIANV-DTVGYKRTAIAFSS 45 (421)
Q Consensus 4 ~~~l~~a~SGL~A~q~al~vts~NIANa-nT~GYsRq~~~~~~ 45 (421)
.+-+-..++||..-+.-++..+..|+.. ++||..+|.+.-++
T Consensus 50 ~~~lll~RaGl~s~~~~l~~la~~~~~~~~~pGr~~~Sl~esS 92 (122)
T pfam05299 50 WGLVLAARSGLYSKDQYLDYLAKTAAGYLNRPGRLWRSVAESS 92 (122)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 9999999849999999999999999999779986334899996
No 121
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=30.03 E-value=23 Score=13.54 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCC
Q ss_conf 8637887753027786714220024654304777763122058857886303411
Q gi|254780525|r 19 NRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGS 73 (421)
Q Consensus 19 ~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~ 73 (421)
++.==++|||+||+. |=| .+|.-+++.++-=.+|+|+
T Consensus 161 rQSly~aNNic~A~~--YFr----------------~~GGr~~llGlvvNrDDGs 197 (355)
T TIGR02016 161 RQSLYVANNICSAAE--YFR----------------KLGGRSKLLGLVVNRDDGS 197 (355)
T ss_pred HHHHHHHHHHHHHHH--HHH----------------HCCCCEEEEEEEEECCCCC
T ss_conf 368888866988999--998----------------6188604678898646887
No 122
>TIGR02105 III_needle type III secretion apparatus needle protein; InterPro: IPR011841 Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus .; GO: 0008565 protein transporter activity, 0009405 pathogenesis, 0015031 protein transport.
Probab=28.09 E-value=31 Score=12.75 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999-------99999999999999999975
Q gi|254780525|r 384 DIASELTELIEAQRN-------YAVNSKVFQTGSDFMDILIS 418 (421)
Q Consensus 384 nlDEEm~nLi~~Q~a-------YqAsArvItt~demldtLln 418 (421)
++-..=..|+++|+| |++.+.+|.++.+|+..+|+
T Consensus 30 d~~~dP~~m~~~Qfa~~~YS~~~N~~S~~~K~iKDl~s~I~~ 71 (73)
T TIGR02105 30 DLPDDPEKMLELQFALNQYSAYLNVESTVVKMIKDLLSGILQ 71 (73)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 884685899999889999998972136699999999998552
No 123
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=26.49 E-value=33 Score=12.57 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 477899999999999999999999999999999999751
Q gi|254780525|r 381 ANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISL 419 (421)
Q Consensus 381 SgVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl 419 (421)
++|||.|=|..+-|-.=+|++--.|=.=+=|-+++|++|
T Consensus 65 ~~v~l~~vMIa~qkA~lsfq~~~qVRNK~v~AYqEIM~M 103 (105)
T PRK00253 65 PGVDLNDVMIALQKASVSFQAGIQVRNKLVAAYQEIMNM 103 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988799999999998889999999999999999999828
No 124
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=23.87 E-value=10 Score=15.78 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999997512
Q gi|254780525|r 399 YAVNSKVFQTGSDFMDILISLK 420 (421)
Q Consensus 399 YqAsArvItt~demldtLlnl~ 420 (421)
|+.|||-=.=++|||++|+.+.
T Consensus 149 ~EtSAKt~~NV~E~F~~L~~~~ 170 (247)
T cd04143 149 FEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EECCCCCCCCHHHHHHHHHHHC
T ss_conf 9887899949899999999854
No 125
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=23.09 E-value=38 Score=12.17 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999975129
Q gi|254780525|r 398 NYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 398 aYqAsArvItt~demldtLlnl~R 421 (421)
-|+-|||-=.=++|+|+.|++|.|
T Consensus 142 ~~E~SAk~~~nV~e~F~~l~~l~~ 165 (165)
T cd04140 142 FMETSAKTNHNVQELFQELLNLEK 165 (165)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 999744779487999999981409
No 126
>KOG3633 consensus
Probab=22.83 E-value=38 Score=12.17 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 99999999999999---9999999997
Q gi|254780525|r 394 EAQRNYAVNSKVFQ---TGSDFMDILI 417 (421)
Q Consensus 394 ~~Q~aYqAsArvIt---t~demldtLl 417 (421)
.|+--|.|++--++ .+|+=|..+|
T Consensus 153 ~l~tl~~aCSse~~p~GpvdqkF~si~ 179 (219)
T KOG3633 153 QLYTLNAACSSEMDPSGPVDQKFESIL 179 (219)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 999999872245689982668789998
No 127
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=21.10 E-value=42 Score=11.91 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=4.1
Q ss_pred HHHHCCCCCC
Q ss_conf 7530277867
Q gi|254780525|r 26 DNIANVDTVG 35 (421)
Q Consensus 26 ~NIANanT~G 35 (421)
+|+.|...|-
T Consensus 7 Rnlg~i~~~~ 16 (323)
T cd07231 7 RNLGNMCNPE 16 (323)
T ss_pred CCCCCCCCHH
T ss_conf 3566789888
Done!