HHsearch results for GI: 254780525 and protein with PDBid: 3a69_A
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=100.00 E-value=0 Score=415.15 Aligned_cols=401 Identities=25% Similarity=0.408 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHHHH
Q ss_conf 89999999999998637887753027786714220024654304777763122058857886303411121483022110
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDLAI 85 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~a~ 85 (421)
+|+||+|||.|+|++|+||||||||||||||||||++|++.++ ++++|.||++.+|+|+++|+.++.+.+.+|+++
T Consensus 1 s~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v~f~~~~~----~~~~G~GV~v~~v~r~~~qg~~~~t~~~~d~ai 76 (402)
T 3a69_A 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA----GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAI 76 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------CEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHC----CCCCCCCEEEEEEEEECCCCCEEECCCCCHHEE
T ss_conf 9789999999999735788888987776420657020777646----687767447767898414564576476003014
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 36662010179882564201122212367201455620111110134555432344544444444455454333211233
Q gi|254780525|r 86 QGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFIS 165 (421)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (421)
.++++|......+...++++..|..+.++.+.+..+...+.+................ ....................
T Consensus 77 ~~~g~f~~~~~~g~~~~tr~g~~~~~~~g~lvn~~g~~l~g~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~t~~~~~~ 154 (402)
T 3a69_A 77 SQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPA--PITIPNTLMAAKSTTTASMQ 154 (402)
T ss_dssp SSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCE--ECCCCCCCCCCBCCCEEEEE
T ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEEE
T ss_conf 2786178862798643641565342788878637896441231457775222567655--52144445676553036763
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 10245544444444445677654322210367540688736778762135555420477630444446566664432100
Q gi|254780525|r 166 NNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTV 245 (421)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (421)
....... ...............+.......+++..|..+.+...+.+.....+................. ...
T Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 227 (402)
T 3a69_A 155 INLNSTD--PVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTT-----AST 227 (402)
T ss_dssp EEEETTC--CCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCS-----CSE
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCC-----CCE
T ss_conf 0246555--566534445577655133333799858997266667877637885237970366655546655-----522
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 122024456445776533212467766554332-3333310023333432334443323443445547763389984143
Q gi|254780525|r 246 EVSFDPVTGYLANSSHKAISFNDNTSGIDQQIT-IDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDG 324 (421)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (421)
...+... +................+....... .....................+...+......++..|.+.+....+
T Consensus 228 ~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dG~~~~~~~~~~i~~dG~v~~~~~~~ 306 (402)
T 3a69_A 228 TLKFNEN-GILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNE 306 (402)
T ss_dssp EEEECTT-SBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEESCBCCCCEEEEEECTTCEEEEEETTS
T ss_pred EEEECCC-CCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 6874146-521457720002345456555431000011200135653112102466555421234217895599973565
Q ss_pred CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21101222001217867877416952663233587021378887611465231000477899999999999999999999
Q gi|254780525|r 325 TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSK 404 (421)
Q Consensus 325 ~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsAr 404 (421)
.........+.+|.|+.+|.+.|++.|.++..+|.+.++.+.....+.+.+++||.|||||||||+|||+|||+||||||
T Consensus 307 ~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~~~~~~lE~S~V~ldeEmtnli~~Q~aY~A~ak 386 (402)
T 3a69_A 307 QEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQ 386 (402)
T ss_dssp CEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 42100112345667857733047960643556777300678878731481075451147999999999999999999752
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999997512
Q gi|254780525|r 405 VFQTGSDFMDILISLK 420 (421)
Q Consensus 405 vItt~demldtLlnl~ 420 (421)
||+|+|||||+|||||
T Consensus 387 vitt~demld~linlk 402 (402)
T 3a69_A 387 TIKTQDQILNTLVNLR 402 (402)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 6649999999997059