Query gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 421
No_of_seqs 133 out of 3438
Neff 10.3
Searched_HMMs 23785
Date Tue May 31 22:05:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780525.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a69_A Flagellar HOOK protein 100.0 0 0 415.2 24.7 401 6-420 1-402 (402)
2 1wlg_A Flagellar HOOK protein 99.9 6.9E-20 2.9E-24 143.0 17.2 298 81-387 2-299 (299)
3 2d4y_A HAP1, flagellar HOOK-as 96.6 0.00013 5.5E-09 45.6 -1.5 19 376-394 445-463 (463)
4 1ucu_A Phase 1 flagellin; flag 91.8 0.28 1.2E-05 24.4 5.3 40 382-421 455-494 (494)
5 1ory_B Flagellin; flagellar ch 56.6 3.2 0.00013 17.7 1.2 40 382-421 16-55 (55)
6 1nei_A Hypothetical protein YO 20.8 26 0.0011 11.9 1.3 15 407-421 33-47 (60)
7 2h2z_A PP1AB, ORF1AB, replicas 10.3 49 0.002 10.1 0.2 13 381-393 257-269 (306)
8 2q6f_A Fragment, infectious br 10.2 49 0.0021 10.1 0.5 13 382-394 262-274 (309)
9 1lvo_A Replicase, hydrolase do 9.8 51 0.0022 10.0 0.5 15 27-41 91-105 (302)
10 3d23_B 3C-like proteinase; mai 8.7 59 0.0025 9.6 0.5 15 27-41 94-108 (302)
No 1
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=100.00 E-value=0 Score=415.15 Aligned_cols=401 Identities=25% Similarity=0.408 Sum_probs=281.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHHHHH
Q ss_conf 89999999999998637887753027786714220024654304777763122058857886303411121483022110
Q gi|254780525|r 6 SMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGLEISTKDMISEQGSLMHTASNTDLAI 85 (421)
Q Consensus 6 ~l~~a~SGL~A~q~al~vts~NIANanT~GYsRq~~~~~~~~~~~~~~~~~G~GV~v~~i~r~~~~~~~~~t~~~~d~a~ 85 (421)
+|+||+|||.|+|++|+||||||||||||||||||++|++.++ ++++|.||++.+|+|+++|+.++.+.+.+|+++
T Consensus 1 s~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v~f~~~~~----~~~~G~GV~v~~v~r~~~qg~~~~t~~~~d~ai 76 (402)
T 3a69_A 1 SFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA----GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAI 76 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC--------------------------------------------------CEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHC----CCCCCCCEEEEEEEEECCCCCEEECCCCCHHEE
T ss_conf 9789999999999735788888987776420657020777646----687767447767898414564576476003014
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 36662010179882564201122212367201455620111110134555432344544444444455454333211233
Q gi|254780525|r 86 QGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFIS 165 (421)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (421)
.++++|......+...++++..|..+.++.+.+..+...+.+................ ....................
T Consensus 77 ~~~g~f~~~~~~g~~~~tr~g~~~~~~~g~lvn~~g~~l~g~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~t~~~~~~ 154 (402)
T 3a69_A 77 SQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGANPA--PITIPNTLMAAKSTTTASMQ 154 (402)
T ss_dssp SSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTCCCE--ECCCCCCCCCCBCCCEEEEE
T ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCEEEEEE
T ss_conf 2786178862798643641565342788878637896441231457775222567655--52144445676553036763
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf 10245544444444445677654322210367540688736778762135555420477630444446566664432100
Q gi|254780525|r 166 NNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTV 245 (421)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (421)
....... ...............+.......+++..|..+.+...+.+.....+................. ...
T Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 227 (402)
T 3a69_A 155 INLNSTD--PVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTT-----AST 227 (402)
T ss_dssp EEEETTC--CCCSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCCCCS-----CSE
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCC-----CCE
T ss_conf 0246555--566534445577655133333799858997266667877637885237970366655546655-----522
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 122024456445776533212467766554332-3333310023333432334443323443445547763389984143
Q gi|254780525|r 246 EVSFDPVTGYLANSSHKAISFNDNTSGIDQQIT-IDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDG 324 (421)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (421)
...+... +................+....... .....................+...+......++..|.+.+....+
T Consensus 228 ~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dG~~~~~~~~~~i~~dG~v~~~~~~~ 306 (402)
T 3a69_A 228 TLKFNEN-GILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGNYSNE 306 (402)
T ss_dssp EEEECTT-SBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEESCBCCCCEEEEEECTTCEEEEEETTS
T ss_pred EEEECCC-CCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 6874146-521457720002345456555431000011200135653112102466555421234217895599973565
Q ss_pred CCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21101222001217867877416952663233587021378887611465231000477899999999999999999999
Q gi|254780525|r 325 TRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSK 404 (421)
Q Consensus 325 ~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDEEm~nLi~~Q~aYqAsAr 404 (421)
.........+.+|.|+.+|.+.|++.|.++..+|.+.++.+.....+.+.+++||.|||||||||+|||+|||+||||||
T Consensus 307 ~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~~~~~~lE~S~V~ldeEmtnli~~Q~aY~A~ak 386 (402)
T 3a69_A 307 QEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQ 386 (402)
T ss_dssp CEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCCC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 42100112345667857733047960643556777300678878731481075451147999999999999999999752
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999997512
Q gi|254780525|r 405 VFQTGSDFMDILISLK 420 (421)
Q Consensus 405 vItt~demldtLlnl~ 420 (421)
||+|+|||||+|||||
T Consensus 387 vitt~demld~linlk 402 (402)
T 3a69_A 387 TIKTQDQILNTLVNLR 402 (402)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 6649999999997059
No 2
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A
Probab=99.85 E-value=6.9e-20 Score=143.00 Aligned_cols=298 Identities=22% Similarity=0.356 Sum_probs=206.5
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22110366620101798825642011222123672014556201111101345554323445444444444554543332
Q gi|254780525|r 81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTT 160 (421)
Q Consensus 81 ~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (421)
||+|+.++++|......+...++|...|..+.+++|.+..+.+.+++............. ..................
T Consensus 2 LDlAI~G~GFFvV~~~~g~~~YTRaG~F~~D~~G~LVn~~G~~l~G~~~d~~~~~~~~~~--~~~~i~i~~~~~~~~aTt 79 (299)
T 1wlg_A 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTGYPATGTPPTIQQGA--NPAPITIPNTLMAAKSTT 79 (299)
T ss_dssp EECCCSSSCEEEEECTTCCEEEESCCEEEECTTSCEECTTCCEEEEEECBTTTTBCCTTC--CCEECCCCCCCBCCBCCC
T ss_pred CCEEECCCCEEEEECCCCCEEEECCCCEEECCCCCEECCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCE
T ss_conf 667876883799876999888834887019899988849999898576368886212577--555421344455776531
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 11233102455444444444456776543222103675406887367787621355554204776304444465666644
Q gi|254780525|r 161 TGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVA 240 (421)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (421)
.......+...... .............+.+.....++|..|..+.+.+++.+.....|.............. .
T Consensus 80 ~~~~~~NL~a~~~~--~~~~~~~~~~~~t~~~~ts~~vyDs~G~~~~~~~~f~k~~~~~w~~~~~~~~~~~~~~-----~ 152 (299)
T 1wlg_A 80 TASMQINLNSTDPV--PSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----P 152 (299)
T ss_dssp EEEEEEEEETTCCC--CSSCSCCTTCTTSCSEEEEEEEECTTCCEEEEEEEEEEEETTEEEEEEEETTCTTCCC-----C
T ss_pred EEEEEECCCCCCCC--CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCC-----C
T ss_conf 47886125543355--5555556466664011566898747995334358876504651389992378754546-----6
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 32100122024456445776533212467766554332333331002333343233444332344344554776338998
Q gi|254780525|r 241 PLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKTTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDII 320 (421)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (421)
......+.|+...................................++............+...|.+....++..|.+.+.
T Consensus 153 ~~~~~~l~Fd~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tq~~~~~~~~~~~~dG~~~G~l~~~~i~~dG~i~~~ 232 (299)
T 1wlg_A 153 TTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPGDLVSYQINNDGTVVGN 232 (299)
T ss_dssp CSCSEEEEECTTSBEEECCEEEEECCCBTTBCCCEEEEECTTCEEESSCCCEEEEEEECCBCCBCEEEEEECTTCEEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEEEECCCEEEEEE
T ss_conf 55305888567762011442000234546654211000000000013674214554038843004310010798089999
Q ss_pred ECCCCCCCCCCCEECCCCCHHHHHHCCCCEEEECCCCCCEEECCCCCCCCEEEEECCEECCCCCHHH
Q ss_conf 4143211012220012178678774169526632335870213788876114652310004778999
Q gi|254780525|r 321 YDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIAS 387 (421)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~n~~~l~~~g~~~~~~~~~sg~~~~~~~~~~~~~~i~~~~le~SgVnlDE 387 (421)
+.++.......+.+++|.||.+|.+.|++.|.++..||.+.++.++...+|+|.+++||+|+|||-|
T Consensus 233 ysNG~~~~lgqiala~F~Np~gL~~~g~n~~~~t~~SG~~~~g~~g~~g~G~i~~g~LE~SNVDla~ 299 (299)
T 1wlg_A 233 YSNEQEQVLGQIVLANFANNEGLASQGDNVWAATQASGVALLGTAGSGNFGKLTNGALEASNVDLSK 299 (299)
T ss_dssp ETTSCEEEEEEECEEECSCGGGSEECSTTCEECCTTTCCCEEECTTBTTBCCCSSCEEEEC------
T ss_pred ECCCCEEEEEEEEEEEECCHHHHHHCCCCEEECCCCCCCCEECCCCCCCCEEEEECCEEHHHCCCCC
T ss_conf 6799478877999996079788330159618765667874324799888233852744223325268
No 3
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=96.62 E-value=0.00013 Score=45.62 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.8
Q ss_pred CCEECCCCCHHHHHHHHHH
Q ss_conf 3100047789999999999
Q gi|254780525|r 376 GALETANVDIASELTELIE 394 (421)
Q Consensus 376 ~~le~SgVnlDEEm~nLi~ 394 (421)
...+.|||||||||+||||
T Consensus 445 ~r~svSGVslDEE~~nLik 463 (463)
T 2d4y_A 445 QQQSVSGVNLDEEYGNLQR 463 (463)
T ss_dssp HHHC---------------
T ss_pred HHHHHHCCCHHHHHHHHCC
T ss_conf 9984406169999997549
No 4
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=91.83 E-value=0.28 Score=24.43 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+-||+++|-|.|=-+||+..|+.=++++-+.+|.|.|
T Consensus 455 DaD~a~e~~~l~~~qi~~Qaa~~~laqAn~~~q~vl~Ll~ 494 (494)
T 1ucu_A 455 DSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 494 (494)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 1409999999999999999999999997526789998409
No 5
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus}
Probab=56.62 E-value=3.2 Score=17.66 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7789999999999999999999999999999999975129
Q gi|254780525|r 382 NVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421 (421)
Q Consensus 382 gVnlDEEm~nLi~~Q~aYqAsArvItt~demldtLlnl~R 421 (421)
-+|+-+|+++|-|.|=-.|++.-++.-++.+=+.+|.|.|
T Consensus 16 DaD~A~E~~~lak~qIL~qa~~amLaQAN~~~q~vL~LLq 55 (55)
T 1ory_B 16 NVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 1559999999999999999999999998426789997519
No 6
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=20.79 E-value=26 Score=11.87 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999975129
Q gi|254780525|r 407 QTGSDFMDILISLKR 421 (421)
Q Consensus 407 tt~demldtLlnl~R 421 (421)
.++-|+...||||+|
T Consensus 33 ~vaa~~vKdLvNiVR 47 (60)
T 1nei_A 33 EVAAEVIKDLVNTVR 47 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 779999999998872
No 7
>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=10.30 E-value=49 Score=10.11 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=5.0
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 4778999999999
Q gi|254780525|r 381 ANVDIASELTELI 393 (421)
Q Consensus 381 SgVnlDEEm~nLi 393 (421)
.||++..=+.-++
T Consensus 257 TGVsVe~lL~aI~ 269 (306)
T 2h2z_A 257 TGIAVLDMCAALK 269 (306)
T ss_dssp HTCCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
T ss_conf 5878999999999
No 8
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=10.23 E-value=49 Score=10.09 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=4.8
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 7789999999999
Q gi|254780525|r 382 NVDIASELTELIE 394 (421)
Q Consensus 382 gVnlDEEm~nLi~ 394 (421)
||++..=+.-+++
T Consensus 262 GV~Ve~lL~aI~~ 274 (309)
T 2q6f_A 262 GVDVCKLLRTIMV 274 (309)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 8779999999999
No 9
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=9.75 E-value=51 Score=9.97 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCCCCE
Q ss_conf 530277867142200
Q gi|254780525|r 27 NIANVDTVGYKRTAI 41 (421)
Q Consensus 27 NIANanT~GYsRq~~ 41 (421)
+.+|++||-|+=.++
T Consensus 91 ~~~N~~TP~y~F~~~ 105 (302)
T 1lvo_A 91 NQVNPNTPEHKFKSI 105 (302)
T ss_dssp SSCCTTCCCCEECCC
T ss_pred ECCCCCCCCEEEEEC
T ss_conf 336899996479963
No 10
>3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1}
Probab=8.74 E-value=59 Score=9.56 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCCCCE
Q ss_conf 530277867142200
Q gi|254780525|r 27 NIANVDTVGYKRTAI 41 (421)
Q Consensus 27 NIANanT~GYsRq~~ 41 (421)
+.+|++||-|+=.++
T Consensus 94 ~~~N~~TPky~F~~~ 108 (302)
T 3d23_B 94 SLQNPYTPKYTFGNV 108 (302)
T ss_dssp SSCCTTCCSEEECCC
T ss_pred ECCCCCCCCEEEEEC
T ss_conf 326899986378963
Done!