BLAST/PSIBLAST alignment of GI: 254780525 and GI: 116250500 at iteration 1
>gi|116250500|ref|YP_766338.1| flagellar hook protein FlgE [Rhizobium leguminosarum bv. viciae 3841] Length = 433
>gi|115255148|emb|CAK06222.1| flagellar hook protein (agr_c_1012p) [Rhizobium leguminosarum bv. viciae 3841] Length = 433
 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 200/437 (45%), Positives = 269/437 (61%), Gaps = 20/437 (4%)

Query: 1   MGILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVGYKRTAIAFSSLVFPSTSNSYVSGGL 60
           M I GSMKTA+SGM+AQ+NR+S V+DNIANV+T GYK  + +FSSLV PS+  +Y SGG+
Sbjct: 1   MSIFGSMKTAVSGMNAQANRLSTVADNIANVNTTGYKAVSTSFSSLVLPSSGGNYNSGGV 60

Query: 61  EISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVA 120
           + S +  +S+QG + +T S+TDLAI G GFFIV+G D    LTRAGDF  ++EG L N A
Sbjct: 61  QTSVRQAVSDQGDISYTTSSTDLAISGDGFFIVQGADGTPVLTRAGDFTKDDEGNLVNAA 120

Query: 121 GGVLLGYPLKNASAPLIVNSFQGLERINVKHAELSAMPTTTGFISNNLDKNATIIT--PD 178
           G  L+GY     S  ++VN F GL  +NV    L+A+ +T+G    NLD  A +++   D
Sbjct: 121 GFQLMGYSYDAGSPAVVVNGFDGLVPVNVNQEGLTAIASTSGVFKGNLDSGANVVSTAAD 180

Query: 179 KTPKHNGRDAEYTHKSSFAAYDTLGSSVVYDVYYTKTG-----------DKKWEVSIFRQ 227
           +   ++      T K S  AYD+LG+ V+YD Y+TKT               WEV+IFR 
Sbjct: 181 RPSANSATTTADTKKFSMVAYDSLGNKVMYDFYFTKTSVTTPPPATPATASTWEVAIFRN 240

Query: 228 -DQST--NNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISFNDNTSGIDQQITIDISKT 284
            D +T    SFPY+ A + T  + FD  TG + NS+  A++  D+T+   Q I +D++  
Sbjct: 241 ADAATGGTTSFPYSTAAIGTTTLDFD-ATGKITNSTG-AVTI-DDTARTGQMIDMDLTGF 297

Query: 285 TQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLK 344
           TQL   F    +  NG A    KD +V  DG V   Y+DG+  P+YR+ +A V S D L 
Sbjct: 298 TQLGADFAGTGTP-NGQAASPVKDVTVDGDGIVYAKYEDGSTKPLYRIPLANVASPDKLT 356

Query: 345 LFDGNTYLPTRDSGDISIGFPGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSK 404
           L  GN Y     SG    GFP  N  G I +GALE +NVD+A ELTE+IE+QR+Y  NSK
Sbjct: 357 LMSGNVYSANGQSGVTVTGFPQTNGLGTIKAGALEGSNVDLAGELTEMIESQRSYTANSK 416

Query: 405 VFQTGSDFMDILISLKR 421
           VFQTGSD MD+L++LKR
Sbjct: 417 VFQTGSDIMDVLVNLKR 433