RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] (421 letters) >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:133-285) Length = 153 Score = 90.3 bits (224), Expect = 4e-19 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 9/158 (5%) Query: 147 INVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSV 206 I + + ++A TTT + NL+ + + TP Y K + YD+ G++ Sbjct: 4 ITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQGNAH 61 Query: 207 VYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISF 266 +VY+ KT D +W V + + + F+ G L + I+ Sbjct: 62 DMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVNITT 115 Query: 267 NDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAP 303 ++ Q G + NG+ P Sbjct: 116 GTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKP 153 >1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:62-218) Length = 157 Score = 89.2 bits (221), Expect = 9e-19 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 9/162 (5%) Query: 144 LERINVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLG 203 I + + ++A TTT + NL+ + + TP Y K + YD+ G Sbjct: 2 PAPITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQG 59 Query: 204 SSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKA 263 ++ +VY+ KT D +W V + + + F+ G L + Sbjct: 60 NAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVN 113 Query: 264 ISFNDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAPG 304 I+ ++ Q G + NG+ PG Sbjct: 114 ITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPG 155 >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:48-116,A:315-358) Length = 113 Score = 65.5 bits (160), Expect = 1e-11 Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 59 GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLEN 118 G++++ G+ +T D+AI GFF + + +R G F ++ L N Sbjct: 3 GVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVN 62 Query: 119 VAGGVLL 125 + G L Sbjct: 63 MQGMQLT 69 Score = 48.9 bits (117), Expect = 1e-06 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGH 367 F + ++ ++ G ++ +A + + L N + T+ SG +G G Sbjct: 51 QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAGS 104 Query: 368 NQHGEIFSG 376 G++ +G Sbjct: 105 GNFGKLTNG 113 >1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:1-46,A:245-281) Length = 83 Score = 57.3 bits (139), Expect = 4e-09 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 81 TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS 140 D+AI GFF + + +R G F ++ L N+ G L L N + Sbjct: 2 LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTV--LANFANN----- 54 Query: 141 FQGLERI 147 +GL Sbjct: 55 -EGLASQ 60 Score = 31.5 bits (72), Expect = 0.19 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPG 366 F + ++ ++ G ++ +A + + L N + T+ SG +G G Sbjct: 28 QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAG 80 >2obn_A Hypothetical protein; protein of unknown function DUF1611, structural genomics, joint center for structural genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis atcc 29413} (A:143-349) Length = 207 Score = 30.0 bits (68), Expect = 0.51 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%) Query: 41 IAFSSLVFPSTSNSYVSGGLEISTKD--------MISEQGSLMHTASNTDLAI 85 + + + + +G +E I QGSL+H S L + Sbjct: 54 LEGDGVALDAVRVDFAAGAVEQXVXRYGKNYDILHIEGQGSLLHPGSTATLPL 106 >2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} (A:) Length = 240 Score = 29.3 bits (65), Expect = 1.0 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Query: 378 LETANVDIASELTELIEAQRNY-AVNSKVFQTGSDFMDILIS 418 +V+ S+L IEA +Y ++++ Q + IS Sbjct: 188 FLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQXRIS 229 >2iqh_A Nucleocapsid protein; oligomerization, RNA binding, NLS, polymerase binding, viral protein; 3.20A {Influenza a virus} (A:143-268,A:378-499) Length = 248 Score = 28.5 bits (63), Expect = 1.5 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 57 SGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115 +G E T DM +E LM +A D++ QG+G F + + + + F ++NEG Sbjct: 172 TGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPS--FDMSNEGS 228 >1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} (A:453-605) Length = 153 Score = 27.9 bits (62), Expect = 2.5 Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 3/64 (4%) Query: 204 SSVVYDVYYTKTGDKKWEVSIFR--QDQSTNNSFPYNVAPLNT-VEVSFDPVTGYLANSS 260 + ++T +Q ++V+ VE+ + S Sbjct: 43 DKGTFRYWFTLDEGVDPADITVSSAYNQCATPEDVHHVSGDLYYVEIDCTGEKIFPGGQS 102 Query: 261 HKAI 264 Sbjct: 103 EHRR 106 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.131 0.371 Gapped Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,910,434 Number of extensions: 125064 Number of successful extensions: 226 Number of sequences better than 10.0: 1 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 16 Length of query: 421 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 330 Effective length of database: 1,879,794 Effective search space: 620332020 Effective search space used: 620332020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 56 (25.5 bits)