RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE
[Candidatus Liberibacter asiaticus str. psy62]
         (421 letters)



>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
           universal joint, bacterial flagellum, motor protein;
           7.10A {Salmonella enterica subsp} (A:133-285)
          Length = 153

 Score = 90.3 bits (224), Expect = 4e-19
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 9/158 (5%)

Query: 147 INVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLGSSV 206
           I + +  ++A  TTT  +  NL+    + +   TP        Y  K +   YD+ G++ 
Sbjct: 4   ITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQGNAH 61

Query: 207 VYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKAISF 266
             +VY+ KT D +W V           +         +  + F+   G L +     I+ 
Sbjct: 62  DMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVNITT 115

Query: 267 NDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAP 303
                      ++       Q  G      +  NG+ P
Sbjct: 116 GTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKP 153


>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural
           protein; 1.80A {Salmonella typhimurium} (A:62-218)
          Length = 157

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 144 LERINVKHAELSAMPTTTGFISNNLDKNATIITPDKTPKHNGRDAEYTHKSSFAAYDTLG 203
              I + +  ++A  TTT  +  NL+    + +   TP        Y  K +   YD+ G
Sbjct: 2   PAPITIPNTLMAAKSTTTASMQINLNSTDPVPSK--TPFSVSDADSYNKKGTVTVYDSQG 59

Query: 204 SSVVYDVYYTKTGDKKWEVSIFRQDQSTNNSFPYNVAPLNTVEVSFDPVTGYLANSSHKA 263
           ++   +VY+ KT D +W V           +         +  + F+   G L +     
Sbjct: 60  NAHDMNVYFVKTKDNEWAVYTHDSSDPAATA-----PTTASTTLKFNE-NGILESGGTVN 113

Query: 264 ISFNDNTSGIDQQITIDISK-TTQLAGGFIPQKSEINGHAPG 304
           I+            ++       Q  G      +  NG+ PG
Sbjct: 114 ITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGYKPG 155


>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
           universal joint, bacterial flagellum, motor protein;
           7.10A {Salmonella enterica subsp} (A:48-116,A:315-358)
          Length = 113

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 59  GLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLEN 118
           G++++        G+  +T    D+AI   GFF +   +     +R G F ++    L N
Sbjct: 3   GVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVN 62

Query: 119 VAGGVLL 125
           + G  L 
Sbjct: 63  MQGMQLT 69



 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPGH 367
            F + ++    ++   G ++      +A   + + L     N +  T+ SG   +G  G 
Sbjct: 51  QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAGS 104

Query: 368 NQHGEIFSG 376
              G++ +G
Sbjct: 105 GNFGKLTNG 113


>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural
           protein; 1.80A {Salmonella typhimurium}
           (A:1-46,A:245-281)
          Length = 83

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 81  TDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGFLENVAGGVLLGYPLKNASAPLIVNS 140
            D+AI   GFF +   +     +R G F ++    L N+ G  L    L N +       
Sbjct: 2   LDVAISQNGFFRLVDSNGSVFYSRNGQFKLDENRNLVNMQGMQLTV--LANFANN----- 54

Query: 141 FQGLERI 147
            +GL   
Sbjct: 55  -EGLASQ 60



 Score = 31.5 bits (72), Expect = 0.19
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 308 DFSVSKDGYVDIIYDDGTRVPIYRLAIATVPSEDNLKLFDGNTYLPTRDSGDISIGFPG 366
            F + ++    ++   G ++      +A   + + L     N +  T+ SG   +G  G
Sbjct: 28  QFKLDENRN--LVNMQGMQL----TVLANFANNEGLASQGDNVWAATQASGVALLGTAG 80


>2obn_A Hypothetical protein; protein of unknown function DUF1611,
           structural genomics, joint center for structural
           genomics, JCSG; HET: PG4; 2.30A {Anabaena variabilis
           atcc 29413} (A:143-349)
          Length = 207

 Score = 30.0 bits (68), Expect = 0.51
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 41  IAFSSLVFPSTSNSYVSGGLEISTKD--------MISEQGSLMHTASNTDLAI 85
           +    +   +    + +G +E              I  QGSL+H  S   L +
Sbjct: 54  LEGDGVALDAVRVDFAAGAVEQXVXRYGKNYDILHIEGQGSLLHPGSTATLPL 106


>2z0v_A SH3-containing GRB2-like protein 3; helix bundle,
           alternative splicing, coiled coil, SH3 domain,
           endocytosis, structural genomics, NPPSFA; 2.49A {Homo
           sapiens} (A:)
          Length = 240

 Score = 29.3 bits (65), Expect = 1.0
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 378 LETANVDIASELTELIEAQRNY-AVNSKVFQTGSDFMDILIS 418
               +V+  S+L   IEA  +Y   ++++ Q     +   IS
Sbjct: 188 FLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQXRIS 229


>2iqh_A Nucleocapsid protein; oligomerization, RNA binding, NLS,
           polymerase binding, viral protein; 3.20A {Influenza a
           virus} (A:143-268,A:378-499)
          Length = 248

 Score = 28.5 bits (63), Expect = 1.5
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 57  SGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115
           +G  E  T DM +E   LM +A   D++ QG+G F +      + +  +  F ++NEG 
Sbjct: 172 TGNTEGRTSDMRTEIIRLMESARPEDVSFQGRGVFELSDEKATSPIVPS--FDMSNEGS 228


>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and
           cellulose-binding domain; glycosyl hydrolase, cellulose
           degradation; 1.90A {Thermobifida fusca} (A:453-605)
          Length = 153

 Score = 27.9 bits (62), Expect = 2.5
 Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 3/64 (4%)

Query: 204 SSVVYDVYYTKTGDKKWEVSIFR--QDQSTNNSFPYNVAPLNT-VEVSFDPVTGYLANSS 260
               +  ++T                +Q       ++V+     VE+       +    S
Sbjct: 43  DKGTFRYWFTLDEGVDPADITVSSAYNQCATPEDVHHVSGDLYYVEIDCTGEKIFPGGQS 102

Query: 261 HKAI 264
               
Sbjct: 103 EHRR 106


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,910,434
Number of extensions: 125064
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 16
Length of query: 421
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 330
Effective length of database: 1,879,794
Effective search space: 620332020
Effective search space used: 620332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)