HHsearch alignment for GI: 254780526 and conserved domain: COG0745
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=100.00 E-value=0 Score=378.95 Aligned_cols=219 Identities=26% Similarity=0.369 Sum_probs=201.9
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC--CCCCCEECC
Q ss_conf 968970989999999999997898899982858999999828996799990078966217999863101--332100002
Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA--HSQVPLIGI 78 (223)
Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~--~~~~pII~l 78 (223)
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~l--P~~dG~~~~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLML--PDLDGLELCRRLRAKKGSGPPIIVL 78 (229)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCC--CCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 899991888999999999987597899978989999997269-9999998899--9856899999998516899988999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4432100001112220100010233333210000011122222-----22112222222222222222222332124210
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E 153 (223)
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g~l~~d~~~~~v~~~~~~l~Lt~~E 158 (229)
T COG0745 79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTLDPDTRTVTLNGRELTLTPKE 158 (229)
T ss_pred ECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEECCCHHH
T ss_conf 66872888999997563423348899899999999996736566554546507988999980219899899873178899
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCEEEECCCCEEECCC
Q ss_conf 12344321128834008999986528765777661368899999986014567-77157786863031388
Q gi|254780526|r 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 (223)
Q Consensus 154 ~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~-~~~I~tvrg~GY~l~~n 223 (223)
T Consensus 159 f~lL~~L~~~~g~v~sR~~L~~~vw~~-~~~~~~rtvdvhI~rLR~Kl~~~~~~~~~I~TvrG~GY~l~~~ 228 (229)
T COG0745 159 FELLELLARHPGRVLSREQLLEAVWGY-DFEVDSRTVDVHISRLRKKLEKDPGAGRLIRTVRGVGYRLEEP 228 (229)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEEECEEEEEEEC
T ss_conf 999999996699526899999986086-6687643305998899997335678777299994526898408