HHsearch alignment for GI: 254780526 and conserved domain: COG2197

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.92  E-value=1.9e-25  Score=180.82  Aligned_cols=195  Identities=17%  Similarity=0.221  Sum_probs=150.0

Q ss_pred             EEEECCCHHHHHHHHHHHHHCC-CEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             6897098999999999999789-8899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDG-VSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g-~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
T Consensus         3 vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl--~mP~~~G~e~~~~l~~~~p~~~vvvl   80 (211)
T COG2197           3 VLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDL--SMPGMDGLEALKQLRARGPDIKVVVL   80 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             9998097779999999998689966999827889999985137998899837--88998759999999986899729999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233-21242101234
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRIL  157 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~LT~~E~~lL  157 (223)
T Consensus        81 t~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~LT~RE~eVl  157 (211)
T COG2197          81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSS---AEAPLAELLTPRELEVL  157 (211)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCC---CCCCCCCCCCHHHHHHH
T ss_conf             677898999999977996998679999999999999975885878899999975035655---44333578998999999


Q ss_pred             HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             432112883400899998652876577766136889999998601456777157
Q gi|254780526|r  158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD  211 (223)
Q Consensus       158 ~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~  211 (223)
T Consensus       158 ~lla~--G--~snkeIA~~L------~iS~~TVk~h~~~i~~KL~v~~Rtea~~  201 (211)
T COG2197         158 RLLAE--G--LSNKEIAEEL------NLSEKTVKTHVSNILRKLGVRNRTEAAI  201 (211)
T ss_pred             HHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             99987--9--9889999997------8789899999999999839998999999