HHsearch alignment for GI: 254780526 and conserved domain: COG2197
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].
Probab=99.92 E-value=1.9e-25 Score=180.82 Aligned_cols=195 Identities=17% Similarity=0.221 Sum_probs=150.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf 6897098999999999999789-8899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-VSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223)
T Consensus 3 vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl--~mP~~~G~e~~~~l~~~~p~~~vvvl 80 (211)
T COG2197 3 VLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDL--SMPGMDGLEALKQLRARGPDIKVVVL 80 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEC--CCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9998097779999999998689966999827889999985137998899837--88998759999999986899729999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHH
Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233-21242101234
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRIL 157 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~LT~~E~~lL 157 (223)
T Consensus 81 t~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~LT~RE~eVl 157 (211)
T COG2197 81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSS---AEAPLAELLTPRELEVL 157 (211)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCC---CCCCCCCCCCHHHHHHH
T ss_conf 677898999999977996998679999999999999975885878899999975035655---44333578998999999
Q ss_pred HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 432112883400899998652876577766136889999998601456777157
Q gi|254780526|r 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 (223)
Q Consensus 158 ~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~ 211 (223)
T Consensus 158 ~lla~--G--~snkeIA~~L------~iS~~TVk~h~~~i~~KL~v~~Rtea~~ 201 (211)
T COG2197 158 RLLAE--G--LSNKEIAEEL------NLSEKTVKTHVSNILRKLGVRNRTEAAI 201 (211)
T ss_pred HHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99987--9--9889999997------8789899999999999839998999999