HHsearch alignment for GI: 254780526 and conserved domain: COG3706

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.76  E-value=1.4e-18  Score=137.47  Aligned_cols=119  Identities=22%  Similarity=0.289  Sum_probs=107.4

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC
Q ss_conf             9689709899999999999978988999828589999998289967999900789662179998631013---3210000
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG   77 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~   77 (223)
T Consensus       134 kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~m--p~~dg~el~~~lr~~~~t~~ipii~  211 (435)
T COG3706         134 KILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANM--PDMDGLELCTRLRQLERTRDIPIIL  211 (435)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf             08997480779999999987536336651598999999746898589995578--7667899999972444445663899


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             24432100001112220100010233333210000011122222
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV  121 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~  121 (223)
T Consensus       212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~  255 (435)
T COG3706         212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY  255 (435)
T ss_pred             EECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf             95266347899999768851673477879999999999985418