HHsearch alignment for GI: 254780526 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=99.76 E-value=1.4e-18 Score=137.47 Aligned_cols=119 Identities=22% Similarity=0.289 Sum_probs=107.4
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEEC
Q ss_conf 9689709899999999999978988999828589999998289967999900789662179998631013---3210000
Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIG 77 (223)
Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~ 77 (223)
T Consensus 134 kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~m--p~~dg~el~~~lr~~~~t~~ipii~ 211 (435)
T COG3706 134 KILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANM--PDMDGLELCTRLRQLERTRDIPIIL 211 (435)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 08997480779999999987536336651598999999746898589995578--7667899999972444445663899
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24432100001112220100010233333210000011122222
Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 (223)
Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~ 121 (223)
T Consensus 212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 95266347899999768851673477879999999999985418