HHsearch alignment for GI: 254780526 and conserved domain: COG3706
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].
Probab=98.76 E-value=4e-09 Score=77.97 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=81.6
Q ss_pred CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 98899982858999999828996799990078966217999863101332100002443210000111222010001023
Q gi|254780526|r 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 (223)
Q Consensus 23 g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~~~~~~~i~~l~~GAddyl~KP 102 (223)
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~~~~~lld~~m--~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHKPDYKLLDVMM--PGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 5546342542779999744898748741006--886730199876358751-6998603787775567763134413677
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 33332100000111222
Q gi|254780526|r 103 IHHREILARVAAIYRRL 119 (223)
Q Consensus 103 ~~~~eL~ari~a~lRr~ 119 (223)
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CCHHHHHHHHHHHCCCH
T ss_conf 77177887526631444