HHsearch alignment for GI: 254780526 and conserved domain: COG3947
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.92 E-value=5.9e-25 Score=177.69 Aligned_cols=216 Identities=19% Similarity=0.259 Sum_probs=169.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
T Consensus 3 ~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~--mp~~ngiefaeQvr~i~~~v~iifIss 80 (361)
T COG3947 3 IIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIV--MPYMNGIEFAEQVRDIESAVPIIFISS 80 (361)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 799846389999999999861102100688788999998438877999852--378608789999987531486899963
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCHHHHH
Q ss_conf 3210000111222010001023333321000001112222222112222222222222-2222223321-2421012344
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFP-LPRRERRILE 158 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~-LT~~E~~lL~ 158 (223)
T Consensus 81 h~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~e-ee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFa 157 (361)
T COG3947 81 HAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAE-EESGTQISCFGGTEVVLRQGQQVKWISRKALELFA 157 (361)
T ss_pred CHHHH--HHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCH-HCCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHH
T ss_conf 05652--3203556675416888888999999987402444410-01370467506400123478422301367999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCC
Q ss_conf 32112883400899998652876577766136889999998601456777157786863031388
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~n 223 (223)
T Consensus 158 yLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne-~vts~d~~Ykld~~ 221 (361)
T COG3947 158 YLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANE-AVTSQDRKYKLDAG 221 (361)
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCC-EEEECCCCEEEECC
T ss_conf 99982488550757999970320046689999999999999845303675-48973772477448