HHsearch alignment for GI: 254780526 and conserved domain: COG3947

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.92  E-value=5.9e-25  Score=177.69  Aligned_cols=216  Identities=19%  Similarity=0.259  Sum_probs=169.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
T Consensus         3 ~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~--mp~~ngiefaeQvr~i~~~v~iifIss   80 (361)
T COG3947           3 IIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIV--MPYMNGIEFAEQVRDIESAVPIIFISS   80 (361)
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             799846389999999999861102100688788999998438877999852--378608789999987531486899963


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCHHHHH
Q ss_conf             3210000111222010001023333321000001112222222112222222222222-2222223321-2421012344
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFP-LPRRERRILE  158 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~-~~~~~g~~i~-LT~~E~~lL~  158 (223)
T Consensus        81 h~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~~~e-ee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFa  157 (361)
T COG3947          81 HAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVELTAE-EESGTQISCFGGTEVVLRQGQQVKWISRKALELFA  157 (361)
T ss_pred             CHHHH--HHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCH-HCCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHH
T ss_conf             05652--3203556675416888888999999987402444410-01370467506400123478422301367999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECCC
Q ss_conf             32112883400899998652876577766136889999998601456777157786863031388
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN  223 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~n  223 (223)
T Consensus       158 yLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne-~vts~d~~Ykld~~  221 (361)
T COG3947         158 YLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANE-AVTSQDRKYKLDAG  221 (361)
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHCCCC-EEEECCCCEEEECC
T ss_conf             99982488550757999970320046689999999999999845303675-48973772477448