HHsearch alignment for GI: 254780526 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.91 E-value=6.2e-25 Score=177.52 Aligned_cols=188 Identities=20% Similarity=0.276 Sum_probs=145.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC
Q ss_conf 9689709899999999999978988999828589999998289967999900789662179998631013-321000024
Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79 (223)
Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt 79 (223)
T Consensus 6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGcll--lDvrMPg~sGlelq~~L~~~~~~~PVIfiT 83 (202)
T COG4566 6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLL--LDVRMPGMSGLELQDRLAERGIRLPVIFLT 83 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEE--EECCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 689976848899999999983895366504799998306678897699--855788885089999999539998879982
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 43210000111222010001023333321000001112222222112222222222222222222332124210123443
Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223)
Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223)
T Consensus 84 GhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~-----~~-----~~~~~l~tLT~RERqVl~~ 153 (202)
T COG4566 84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADR-----QA-----AIRARLATLTPRERQVLDL 153 (202)
T ss_pred CCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHCCHHHHHHHHH
T ss_conf 7887289999997421567747885489999999999988888876778-----99-----9999998669889999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 211288340089999865287657776613688999999860145677715
Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 (223)
Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I 210 (223)
T Consensus 154 vV~--G~--~NKqIA~dL------giS~rTVe~HRanvM~Km~a~SlaeLv 194 (202)
T COG4566 154 VVR--GL--MNKQIAFDL------GISERTVELHRANVMEKMQARSLAELV 194 (202)
T ss_pred HHC--CC--CCHHHHHHC------CCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 983--76--308999983------986645999999999997333199999