HHsearch alignment for GI: 254780526 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.91  E-value=6.2e-25  Score=177.52  Aligned_cols=188  Identities=20%  Similarity=0.276  Sum_probs=145.5

Q ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCC
Q ss_conf             9689709899999999999978988999828589999998289967999900789662179998631013-321000024
Q gi|254780526|r    1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS   79 (223)
Q Consensus         1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt   79 (223)
T Consensus         6 ~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGcll--lDvrMPg~sGlelq~~L~~~~~~~PVIfiT   83 (202)
T COG4566           6 LVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLL--LDVRMPGMSGLELQDRLAERGIRLPVIFLT   83 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEE--EECCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             689976848899999999983895366504799998306678897699--855788885089999999539998879982


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             43210000111222010001023333321000001112222222112222222222222222222332124210123443
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY  159 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~  159 (223)
T Consensus        84 GhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~-----~~-----~~~~~l~tLT~RERqVl~~  153 (202)
T COG4566          84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADR-----QA-----AIRARLATLTPRERQVLDL  153 (202)
T ss_pred             CCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHCCHHHHHHHHH
T ss_conf             7887289999997421567747885489999999999988888876778-----99-----9999998669889999999


Q ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             211288340089999865287657776613688999999860145677715
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV  210 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I  210 (223)
T Consensus       154 vV~--G~--~NKqIA~dL------giS~rTVe~HRanvM~Km~a~SlaeLv  194 (202)
T COG4566         154 VVR--GL--MNKQIAFDL------GISERTVELHRANVMEKMQARSLAELV  194 (202)
T ss_pred             HHC--CC--CCHHHHHHC------CCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             983--76--308999983------986645999999999997333199999