HHsearch alignment for GI: 254780526 and conserved domain: COG4753

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].
Probab=99.74  E-value=4.5e-18  Score=134.33  Aligned_cols=113  Identities=19%  Similarity=0.297  Sum_probs=99.5

Q ss_pred             EEEECCCHHHHHHHHHHH--HHCCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEEC
Q ss_conf             689709899999999999--9789889-9982858999999828996799990078966217999863101-33210000
Q gi|254780526|r    2 FVLIDDRALVKDGYIALF--GDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG   77 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L--~~~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~   77 (223)
T Consensus         4 VlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI--~MP~mdGLdLI~~ike~~p~~~~II   81 (475)
T COG4753           4 VLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDI--NMPGMDGLDLIKAIKEQSPDTEFII   81 (475)
T ss_pred             EEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEEC--CCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             99966729999999984885636975787514579999998734997899815--7888757999999997499853999


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             244321000011122201000102333332100000111
Q gi|254780526|r   78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
T Consensus        82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~  120 (475)
T COG4753          82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKII  120 (475)
T ss_pred             EECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHH
T ss_conf             846420589999986185212207698999999999999