HHsearch alignment for GI: 254780526 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.
Probab=92.76  E-value=0.075  Score=32.16  Aligned_cols=50  Identities=22%  Similarity=0.422  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             21242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r  147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL  205 (223)
Q Consensus       147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~  205 (223)
T Consensus       113 s~Lt~rErevfl-l--~~~~glsy~EIA~~L------~Is~~tV~~~l~RA~~Ki~~~~  162 (170)
T PRK06930        113 SVLTEREKEVYL-M--HRGYGLSYSEIAAYL------NIKKSTVQSMIERAEKKIAKQI  162 (170)
T ss_pred             HHCCHHHHHHHH-H--HHHHCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf             856988889998-8--976188899999997------9889999999999999999985