HHsearch alignment for GI: 254780526 and conserved domain: PRK06930
>PRK06930 positive control sigma-like factor; Validated.
Probab=92.76 E-value=0.075 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=40.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 21242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223)
Q Consensus 147 i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223)
T Consensus 113 s~Lt~rErevfl-l--~~~~glsy~EIA~~L------~Is~~tV~~~l~RA~~Ki~~~~ 162 (170)
T PRK06930 113 SVLTEREKEVYL-M--HRGYGLSYSEIAAYL------NIKKSTVQSMIERAEKKIAKQI 162 (170)
T ss_pred HHCCHHHHHHHH-H--HHHHCCCHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 856988889998-8--976188899999997------9889999999999999999985