HHsearch alignment for GI: 254780526 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=100.00 E-value=0 Score=390.02 Aligned_cols=218 Identities=17% Similarity=0.318 Sum_probs=203.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
T Consensus 3 ILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~l--P~~~G~~l~~~iR~~~~~~PII~Lta 80 (226)
T PRK09836 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGWDIVRMLRSANKGMPILLLTA 80 (226)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 9999399999999999998789999998999999999851899999988999--99987204356776167960999944
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 321000011122201000102333332100000111222222--211222222222222222222233212421012344
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~~~~~~~~~~~~~~l~~d~~~~~v~~~g~~v~LT~~E~~lL~ 160 (226)
T PRK09836 81 LGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE 160 (226)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHH
T ss_conf 58988999999769968863687679999999999662666677650798779985141189889999856889999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 3211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 161 ~L~~~~g~vvsre~l~~~vw~~-~~~~~~~~vdv~I~rLR~Kl~~~~~~~~I~TvrG~GY~l~~ 223 (226)
T PRK09836 161 FFLRHQGEVLPRSLIASQVWDM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 (226)
T ss_pred HHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEC
T ss_conf 9986899648799999996288-87888588999999999985788999839996681569844