HHsearch alignment for GI: 254780526 and conserved domain: PRK09935
>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.93 E-value=2.7e-26 Score=186.06 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=152.1
Q ss_pred EEEECCCHHHHHHHHHHHHHC-CCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf 689709899999999999978-98899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD-GVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~-g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223)
T Consensus 6 VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~l--p~~~g~~~i~~i~~~~p~~~ilvl 83 (210)
T PRK09935 6 VIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIEL--PGTDGFTLLKRIKQIQETVKVLFL 83 (210)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 999859699999999999629892899998999999999974799999988999--998864056789873899708997
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
T Consensus 84 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~Lt~RE~eVL~ 159 (210)
T PRK09935 84 SSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFFPSET----LNFIKSNKCSKGSSTDMPLSNREVTVLR 159 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 176729999999966877688678999999999999985995369899----9998734366665567899989999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 3211288340089999865287657776613688999999860145677715
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I 210 (223)
T Consensus 160 ll~~--G--~snkeIA~~L------~iS~~TV~~h~~~I~~KL~v~nr~elv 201 (210)
T PRK09935 160 YLAN--G--LSNKEIAEQL------LLSNKTISAHKSNIYGKLGLHSIVELI 201 (210)
T ss_pred HHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9986--9--9999999894------988999999999999981999999999