HHsearch alignment for GI: 254780526 and conserved domain: PRK09935

>PRK09935 transcriptional regulator FimZ; Provisional.
Probab=99.93  E-value=2.7e-26  Score=186.06  Aligned_cols=193  Identities=15%  Similarity=0.224  Sum_probs=152.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-CCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf             689709899999999999978-98899-982858999999828996799990078966217999863101-332100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD-GVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~-g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l   78 (223)
T Consensus         6 VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~l--p~~~g~~~i~~i~~~~p~~~ilvl   83 (210)
T PRK09935          6 VIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIEL--PGTDGFTLLKRIKQIQETVKVLFL   83 (210)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf             999859699999999999629892899998999999999974799999988999--998864056789873899708997


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE  158 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~  158 (223)
T Consensus        84 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~~~~~~~~----~~~~~~~~~~~~~~~~~~Lt~RE~eVL~  159 (210)
T PRK09935         84 SSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGYSFFPSET----LNFIKSNKCSKGSSTDMPLSNREVTVLR  159 (210)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             176729999999966877688678999999999999985995369899----9998734366665567899989999999


Q ss_pred             HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             3211288340089999865287657776613688999999860145677715
Q gi|254780526|r  159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV  210 (223)
Q Consensus       159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I  210 (223)
T Consensus       160 ll~~--G--~snkeIA~~L------~iS~~TV~~h~~~I~~KL~v~nr~elv  201 (210)
T PRK09935        160 YLAN--G--LSNKEIAEQL------LLSNKTISAHKSNIYGKLGLHSIVELI  201 (210)
T ss_pred             HHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9986--9--9999999894------988999999999999981999999999