HHsearch alignment for GI: 254780526 and conserved domain: PRK10153
>PRK10153 DNA-binding transcriptional activator CadC; Provisional.
Probab=99.33 E-value=3e-12 Score=97.62 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=88.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 21122222222222222222223321242101234432112883400899998652876577766136889999998601
Q gi|254780526|r 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 (223)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~ 202 (223)
T Consensus 3 ~~~F~I~dWl~~p~ENkl~r~drev~iEpRLinLL~Fla~hpg~VfsRDELI~~VW~G--aIvTDQVVTQSIFELRKiLK 80 (512)
T PRK10153 3 QPVFRIGDWLLTPSENQLSRQDREVTLEPRLINLLVFLAQHSGEVFSRDELIDHVWDG--AIVTDQVVTQSIFELRKSLR 80 (512)
T ss_pred CCEEEECCEEEECCCCEEEECCCEEEECHHHHHHHHHHHCCCCCEECHHHHHHHHCCC--CEECCCHHHHHHHHHHHHHH
T ss_conf 7669963579962667366669879864778999999851999534399999986278--74113025588999999986
Q ss_pred CCC--CCCCEEEECCCCEEECC
Q ss_conf 456--77715778686303138
Q gi|254780526|r 203 NKL--GFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 203 ~~~--~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 81 dg~~~~~~YIvTVPKRGYKLvA 102 (512)
T PRK10153 81 DGREDNPEYIVTVPKRGYKLVA 102 (512)
T ss_pred CCCCCCCCEEEEECCCCCEECC
T ss_conf 3886788729983688631246