HHsearch alignment for GI: 254780526 and conserved domain: PRK10161

>PRK10161 transcriptional regulator PhoB; Provisional.
Probab=100.00  E-value=0  Score=393.99  Aligned_cols=218  Identities=18%  Similarity=0.311  Sum_probs=203.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCC---CCCEECC
Q ss_conf             6897098999999999999789889998285899999982899679999007896621799986310133---2100002
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGI   78 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~---~~pII~l   78 (223)
T Consensus         5 ILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~l--P~~dG~~~~~~ir~~~~~~~~PII~l   82 (229)
T PRK10161          5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGIQFIKHLKRESMTRDIPVVML   82 (229)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCCHHHHHHHHHCCCCCCCCEEEE
T ss_conf             9999599999999999999779999998999999999852899899997899--88763358788775024689758999


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             44321000011122201000102333332100000111222222--2112222222222222222222332124210123
Q gi|254780526|r   79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI  156 (223)
Q Consensus        79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~--~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~l  156 (223)
T Consensus        83 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~~~~~~~~~~~~~~l~~d~~~~~v~~~~~~i~LT~~E~~L  162 (229)
T PRK10161         83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKL  162 (229)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEEEEEEEEECCEEEECCHHHHHH
T ss_conf             55666577999987698765208999899999999997123777765432677789861015999999998706899999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             443211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
T Consensus       163 L~~L~~~~g~vvsr~~L~~~vwg~-~~~~~~rtldv~I~rLRkKl~~~~~~~~I~TvrG~GYr~~~  227 (229)
T PRK10161        163 LHFFMTHPERVYSREQLLNHVWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST  227 (229)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECC
T ss_conf             999997799879799999986399-98988473999999999974567999819986584740571