HHsearch alignment for GI: 254780526 and conserved domain: PRK10188
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional.
Probab=96.74 E-value=0.0017 Score=42.45 Aligned_cols=51 Identities=25% Similarity=0.449 Sum_probs=43.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 3321242101234432112883400899998652876577766136889999998601456
Q gi|254780526|r 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 (223)
Q Consensus 145 ~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~ 205 (223)
T Consensus 176 ~~~~LT~RE~E~L~W~A~--GK--Ts~EIa~IL------~ISe~TV~fHl~na~~KL~a~N 226 (240)
T PRK10188 176 PEMNFSKREKEILKWTAE--GK--TSAEIAMIL------SISENTVNFHQKNMQKKFNAPN 226 (240)
T ss_pred CCCCCCHHHHHHHHHHHC--CC--CHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCC
T ss_conf 878899899999999977--99--999999883------9999999999999999958998