HHsearch alignment for GI: 254780526 and conserved domain: PRK10336
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional.
Probab=100.00 E-value=0 Score=379.65 Aligned_cols=214 Identities=27% Similarity=0.376 Sum_probs=199.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
T Consensus 3 ILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~l--P~~dG~~l~~~iR~~~~~~PII~lta 80 (219)
T PRK10336 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGRDILREWREKGQREPVLILTA 80 (219)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf 9999389999999999999879999998999999999862896999997999--99985631010465278887899806
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32100001112220100010233333210000011122222-22112222222222222222222332124210123443
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223)
T Consensus 81 ~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~~~~~~~~~~~g~~~ld~~~~~~~~~g~~i~LT~~E~~lL~~ 160 (219)
T PRK10336 81 RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL 160 (219)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHEEEECCCEEEEECHHHHHHHHH
T ss_conf 89999999999769988868897679999999999611546666431027789831362996499799837899999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 161 L~~~~g~vvsre~l~~~vw~~-~~~~~~~~vdv~I~rLRkKl~~----~~I~TvrG~GY~l~e 218 (219)
T PRK10336 161 LMRNAGRVLPRKLIEEKLYTW-DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE 218 (219)
T ss_pred HHHCCCCCCCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCC----CCEEEECCCCEEECC
T ss_conf 996899639799999996288-9888858199999999976798----858981575868662