HHsearch alignment for GI: 254780526 and conserved domain: PRK10336

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional.
Probab=100.00  E-value=0  Score=379.65  Aligned_cols=214  Identities=27%  Similarity=0.376  Sum_probs=199.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
T Consensus         3 ILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~l--P~~dG~~l~~~iR~~~~~~PII~lta   80 (219)
T PRK10336          3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTL--PGMDGRDILREWREKGQREPVLILTA   80 (219)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCHHHHCCCCCEEEEEC
T ss_conf             9999389999999999999879999998999999999862896999997999--99985631010465278887899806


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             32100001112220100010233333210000011122222-22112222222222222222222332124210123443
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY  159 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~  159 (223)
T Consensus        81 ~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~~~~~~~~~~~g~~~ld~~~~~~~~~g~~i~LT~~E~~lL~~  160 (219)
T PRK10336         81 RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL  160 (219)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHEEEECCCEEEEECHHHHHHHHH
T ss_conf             89999999999769988868897679999999999611546666431027789831362996499799837899999999


Q ss_pred             HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
T Consensus       161 L~~~~g~vvsre~l~~~vw~~-~~~~~~~~vdv~I~rLRkKl~~----~~I~TvrG~GY~l~e  218 (219)
T PRK10336        161 LMRNAGRVLPRKLIEEKLYTW-DEEVTSNAVEVHVHHLRRKLGS----DFIRTVHGIGYTLGE  218 (219)
T ss_pred             HHHCCCCCCCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCC----CCEEEECCCCEEECC
T ss_conf             996899639799999996288-9888858199999999976798----858981575868662