HHsearch alignment for GI: 254780526 and conserved domain: PRK10403
>PRK10403 transcriptional regulator NarP; Provisional.
Probab=99.95 E-value=2.9e-27 Score=192.25 Aligned_cols=190 Identities=21% Similarity=0.227 Sum_probs=149.9
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEE-EEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECC
Q ss_conf 68970989999999999997-89889-9982858999999828996799990078966217999863101-332100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGD-DGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~-~g~~v-~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~l 78 (223)
T Consensus 9 IlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~l--p~~~G~~~~~~l~~~~p~~~iivl 86 (215)
T PRK10403 9 VLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNM--KGMSGLDTLNALRRDGVTAQIIIL 86 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCC--CCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 999839899999999999758992899998999999999864499899980899--899874123356541887736886
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
T Consensus 87 t~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~--~-l~~~~~~~~~~~~~~~LT~RE~eVL~ 163 (215)
T PRK10403 87 TVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQ--Y-LREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHH--H-HHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 32432367899874687668848999999999999998499847989999--9-98742124667744568999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 321128834008999986528765777661368899999986014567
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223)
T Consensus 164 lla~--G--~snkeIA~~L------~iS~~TV~~h~~~I~~KLgv~nR 201 (215)
T PRK10403 164 ELAQ--G--LSNKQIASVL------NISEQTVKVHIRNLLRKLNVRSR 201 (215)
T ss_pred HHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 9986--9--9999999997------98299999999999998689989