HHsearch alignment for GI: 254780526 and conserved domain: PRK10693

>PRK10693 response regulator of RpoS; Provisional.
Probab=99.92  E-value=2.3e-25  Score=180.29  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=105.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf             689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD   80 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~   80 (223)
T Consensus        10 ILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~--MP~mdGlell~~lr~~~~~~PVIvlTa   87 (337)
T PRK10693         10 ILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKFVEHLRNRGDQTPVLVISA   87 (337)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             999949999999999999978999999899999999986589999999689--999998999999998589964999986


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCC
Q ss_conf             32100001112220100010233-33321000001112
Q gi|254780526|r   81 YPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYR  117 (223)
Q Consensus        81 ~~~~~~~i~~l~~GAddyl~KP~-~~~eL~ari~a~lR  117 (223)
T Consensus        88 ~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~  125 (337)
T PRK10693         88 TENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY  125 (337)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf             89999999999749958997896999999999998751