HHsearch alignment for GI: 254780526 and conserved domain: PRK10693
>PRK10693 response regulator of RpoS; Provisional.
Probab=99.92 E-value=2.3e-25 Score=180.29 Aligned_cols=114 Identities=17% Similarity=0.154 Sum_probs=105.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
T Consensus 10 ILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~--MP~mdGlell~~lr~~~~~~PVIvlTa 87 (337)
T PRK10693 10 ILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA--MPRMNGLKFVEHLRNRGDQTPVLVISA 87 (337)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECC--CCCCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 999949999999999999978999999899999999986589999999689--999998999999998589964999986
Q ss_pred CCCCCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCC
Q ss_conf 32100001112220100010233-33321000001112
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYR 117 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~-~~~eL~ari~a~lR 117 (223)
T Consensus 88 ~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 88 TENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 89999999999749958997896999999999998751