HHsearch alignment for GI: 254780526 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=100.00 E-value=0 Score=371.18 Aligned_cols=218 Identities=24% Similarity=0.387 Sum_probs=204.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
T Consensus 3 ILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~l--p~~~G~~l~~~ir~~~~~~piI~lta 80 (223)
T PRK10816 3 VLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLSLIRRWRSNDVSLPILVLTA 80 (223)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCHHCCCCCCCEEEEEC
T ss_conf 9999598999999999999789999998999999999975799899997999--89886400120110489876899944
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 321000011122201000102333332100000111222222-2112222222222222222222332124210123443
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223)
T Consensus 81 ~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~~~~~~~~~~~~~~~~d~~~~~~~~~g~~i~LT~~E~~LL~~ 160 (223)
T PRK10816 81 RESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET 160 (223)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEHHHCEEEECCEEEEECHHHHHHHHH
T ss_conf 45677899999869988641897778999999999665557877618878868711005898799899706899999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 161 L~~~~~~vvsre~l~~~vw~~-~~~~~~~sld~~I~rLRkKl~~~~~~~~I~tvrG~GY~~~~ 222 (223)
T PRK10816 161 LIRNNGKVVSKDSLMLQLYPD-AELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFEL 222 (223)
T ss_pred HHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEE
T ss_conf 998799238399999985499-87888677999999999974335899818997895679875