HHsearch alignment for GI: 254780526 and conserved domain: PRK10840
>PRK10840 transcriptional regulator RcsB; Provisional.
Probab=99.92 E-value=4.1e-25 Score=178.69 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=154.0
Q ss_pred EEEECCCHHHHHHHHHHHHHCC-CEEE-EEECHHHHHHHHHHCCCCEEEEEEECCC-CCCHHHHHHHHHHC-CCCCCEEC
Q ss_conf 6897098999999999999789-8899-9828589999998289967999900789-66217999863101-33210000
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDG-VSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRA-HSQVPLIG 77 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g-~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~-~~~~g~~l~~~lr~-~~~~pII~ 77 (223)
T Consensus 6 IlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~~viv 85 (216)
T PRK10840 6 VIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIV 85 (216)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99988979999999999815999689998799999999986239898998267799988789999999998589980899
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHH
Q ss_conf 2443210000111222010001023333321000001112222222112222222222222222222-332124210123
Q gi|254780526|r 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRI 156 (223)
Q Consensus 78 lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g-~~i~LT~~E~~l 156 (223)
T Consensus 86 ls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~~~~~~~~~--~~-l~~----~~~~~~~~~~LT~RE~eV 158 (216)
T PRK10840 86 LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVS--RL-LEK----ISAGGYGDKRLSPKESEV 158 (216)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH--HH-HHH----HCCCCCCCCCCCHHHHHH
T ss_conf 84778789999998589748998789999999999999879943969999--99-997----205888778999899999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf 4432112883400899998652876577766136889999998601456777157786863
Q gi|254780526|r 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 (223)
Q Consensus 157 L~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~G 217 (223)
T Consensus 159 L~lla~--G--~snkeIA~~L------~iS~~TV~~h~~~i~~KLgv~n~~eLv~ya~~~g 209 (216)
T PRK10840 159 LRLFAE--G--FLVTEIAKKL------NRSIKTISSQKKSAMMKLGVENDIALLNYLSSVT 209 (216)
T ss_pred HHHHHC--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 999986--9--9999999896------9899999999999999829998999999999869