HHsearch alignment for GI: 254780526 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=99.86 E-value=2e-21 Score=155.44 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=102.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC---CCCCEECC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013---32100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~---~~~pII~l 78 (223)
T Consensus 671 VLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiq--MP~MDG~eATr~IR~~~~~~~~PIIAl 748 (920)
T PRK11107 671 VMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQ--MPGMDGIRACELIRQLPHNQNTPIIAV 748 (920)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCC--CCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 999848899999999999984988999899999999974799978998899--999989999999981867898959999
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 44321000011122201000102333332100000111
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223)
T Consensus 749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~ 786 (920)
T PRK11107 749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWK 786 (920)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHC
T ss_conf 79989899999997799938728799999999999867