HHsearch alignment for GI: 254780526 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=100.00 E-value=0 Score=393.59 Aligned_cols=218 Identities=23% Similarity=0.322 Sum_probs=206.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf 68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~ 81 (223)
T Consensus 3 ILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~l--P~~dG~~l~~~iR~~~~~pII~lta~ 80 (223)
T PRK11517 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGWQILQTLRTAKQTPVICLTAR 80 (223)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999698999999999999889999998999999999852899999984999--87368999999985688648999565
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 21000011122201000102333332100000111222222211222222222222222222233212421012344321
Q gi|254780526|r 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 (223)
Q Consensus 82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~ 161 (223)
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~~~~~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~L~ 160 (223)
T PRK11517 81 DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA 160 (223)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHHHH
T ss_conf 56578999998398776208977899999999996414577871798878980013189629989829999999999998
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 1288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 162 ~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
T Consensus 161 ~~~g~vvsre~l~~~vwg~-~~~~~~~~idv~I~rLRkKl~~~~~~~~I~TvrG~GYrl~a 220 (223)
T PRK11517 161 SRAGEIIPRTVIASEIWGI-NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 (223)
T ss_pred HCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEE
T ss_conf 6899859899999996298-87888587999999999985788999958976681669953