HHsearch alignment for GI: 254780526 and conserved domain: PRK11517

>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=100.00  E-value=0  Score=393.59  Aligned_cols=218  Identities=23%  Similarity=0.322  Sum_probs=206.5

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCCC
Q ss_conf             68970989999999999997898899982858999999828996799990078966217999863101332100002443
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY   81 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~~   81 (223)
T Consensus         3 ILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~l--P~~dG~~l~~~iR~~~~~pII~lta~   80 (223)
T PRK11517          3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGWQILQTLRTAKQTPVICLTAR   80 (223)
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCC--CCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf             9999698999999999999889999998999999999852899999984999--87368999999985688648999565


Q ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             21000011122201000102333332100000111222222211222222222222222222233212421012344321
Q gi|254780526|r   82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM  161 (223)
Q Consensus        82 ~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~  161 (223)
T Consensus        81 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~~~~~~~~~~~~l~ld~~~~~v~~~~~~i~LT~~E~~LL~~L~  160 (223)
T PRK11517         81 DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA  160 (223)
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEEHHHEEEEECCEEECCCHHHHHHHHHHH
T ss_conf             56578999998398776208977899999999996414577871798878980013189629989829999999999998


Q ss_pred             CCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf             1288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r  162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW  222 (223)
Q Consensus       162 ~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~  222 (223)
T Consensus       161 ~~~g~vvsre~l~~~vwg~-~~~~~~~~idv~I~rLRkKl~~~~~~~~I~TvrG~GYrl~a  220 (223)
T PRK11517        161 SRAGEIIPRTVIASEIWGI-NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA  220 (223)
T ss_pred             HCCCCCCCHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEE
T ss_conf             6899859899999996298-87888587999999999985788999958976681669953