HHsearch alignment for GI: 254780526 and conserved domain: PRK12370
>PRK12370 invasion protein regulator; Provisional.
Probab=99.57 E-value=3.6e-15 Score=116.07 Aligned_cols=99 Identities=20% Similarity=0.273 Sum_probs=89.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 22221122222222222222222223321242101234432112883400899998652876577766136889999998
Q gi|254780526|r 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 (223)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRk 199 (223)
T Consensus 8 ~~~n~qy~F~dFvLd~d-r~L~r~~~~v~I~Pqvf~lL~lLvenrdrvVSKdELi~~VW~g--riVSEstLtsrI~a~Rk 84 (553)
T PRK12370 8 PVSNKKFVFDDFILNMD-GSLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGD--AEVNEESLTRCIYALRR 84 (553)
T ss_pred CCCCCEEEECCEEECCC-HHEEECCCEECCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCC--CEECHHHHHHHHHHHHH
T ss_conf 55554010145356540-2200059641348479999999984767537499999983599--62038899999999999
Q ss_pred HCCCCCCCCCEEEECCCCEEEC
Q ss_conf 6014567771577868630313
Q gi|254780526|r 200 KLRNKLGFDPVDSKRFLGYSID 221 (223)
Q Consensus 200 KL~~~~~~~~I~tvrg~GY~l~ 221 (223)
T Consensus 85 aLgD~~eqr~IrTv~gkGyRF~ 106 (553)
T PRK12370 85 ILSEDKEHRYIETLYGQGYRFN 106 (553)
T ss_pred HHCCCCCCEEEEHHCCCCEEEC
T ss_conf 8587544502441037842425