HHsearch alignment for GI: 254780526 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.15 E-value=9e-12 Score=94.62 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=86.1
Q ss_pred EEEECCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf 689709899999999999978-98899982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223)
T Consensus 20 ~l~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv--~dy~~~~~dGieLLe~vRe~~p~lP~Il~t 96 (674)
T PRK13558 20 VLFAGSDPETGPAACD-LDEDGRFDVTQIRDFVAARDRVDDPDIDCVV--AVHEPDGFDGVAFLEAVRQTHAEFPVVVVP 96 (674)
T ss_pred EEEECCCCCCCCCCCC-CCCCCCCCEEEECCHHHHHHHHCCCCCCEEE--ECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 9994688877752345-6667742127632388898653158987699--656578886799999986138999889995
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4321000011122201000102333332100000111
Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223)
Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223)
T Consensus 97 ~~gsE~vas~AI~AGvt~Yl--p~~~~~~~~~~~~~i 131 (674)
T PRK13558 97 TAVDEDVARRAVDADATGLV--PAVSEDATAAIADRI 131 (674)
T ss_pred CCCCHHHHHHHHHHCHHHHC--CCCCHHHHHHHHHHH
T ss_conf 67858999998751636433--447176899999999