HHsearch alignment for GI: 254780526 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.15  E-value=9e-12  Score=94.62  Aligned_cols=110  Identities=11%  Similarity=0.115  Sum_probs=86.1

Q ss_pred             EEEECCCHHHHHHHHHHHHHC-CCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf             689709899999999999978-98899982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS   79 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt   79 (223)
T Consensus        20 ~l~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv--~dy~~~~~dGieLLe~vRe~~p~lP~Il~t   96 (674)
T PRK13558         20 VLFAGSDPETGPAACD-LDEDGRFDVTQIRDFVAARDRVDDPDIDCVV--AVHEPDGFDGVAFLEAVRQTHAEFPVVVVP   96 (674)
T ss_pred             EEEECCCCCCCCCCCC-CCCCCCCCEEEECCHHHHHHHHCCCCCCEEE--ECCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             9994688877752345-6667742127632388898653158987699--656578886799999986138999889995


Q ss_pred             CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             4321000011122201000102333332100000111
Q gi|254780526|r   80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
T Consensus        97 ~~gsE~vas~AI~AGvt~Yl--p~~~~~~~~~~~~~i  131 (674)
T PRK13558         97 TAVDEDVARRAVDADATGLV--PAVSEDATAAIADRI  131 (674)
T ss_pred             CCCCHHHHHHHHHHCHHHHC--CCCCHHHHHHHHHHH
T ss_conf             67858999998751636433--447176899999999