HHsearch alignment for GI: 254780526 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.49  E-value=3.3e-14  Score=109.94  Aligned_cols=113  Identities=18%  Similarity=0.205  Sum_probs=103.4

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHCC----C-----
Q ss_conf             6897098999999999999789889998285899999982-89967999900789662179998631013----3-----
Q gi|254780526|r    2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKVLELPRIIRAH----S-----   71 (223)
Q Consensus         2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~~~g~~l~~~lr~~----~-----   71 (223)
T Consensus       764 vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~L--PD~dGVtL~~~L~~~~~~k~~~~~~  841 (1052)
T TIGR02956       764 VLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINL--PDGDGVTLLQQLRAIYKAKNDSQDE  841 (1052)
T ss_pred             EEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCC--CCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             32464474779999999842794472085499999998548876754551578--8986567899999999732044456


Q ss_pred             CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf             210000244321000011122201000102333332100000111
Q gi|254780526|r   72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY  116 (223)
Q Consensus        72 ~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l  116 (223)
T Consensus       842 p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       842 PVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             777222113344776999975302663479987788999999987