HHsearch alignment for GI: 254780526 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.49 E-value=3.3e-14 Score=109.94 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=103.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHH-CCCCEEEEEEECCCCCCHHHHHHHHHHCC----C-----
Q ss_conf 6897098999999999999789889998285899999982-89967999900789662179998631013----3-----
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKVLELPRIIRAH----S----- 71 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~-~~~d~~iid~~l~~~~~~g~~l~~~lr~~----~----- 71 (223)
T Consensus 764 vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~L--PD~dGVtL~~~L~~~~~~k~~~~~~ 841 (1052)
T TIGR02956 764 VLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINL--PDGDGVTLLQQLRAIYKAKNDSQDE 841 (1052)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCC--CCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 32464474779999999842794472085499999998548876754551578--8986567899999999732044456
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 210000244321000011122201000102333332100000111
Q gi|254780526|r 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 (223)
Q Consensus 72 ~~pII~lt~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~l 116 (223)
T Consensus 842 p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 842 PVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 777222113344776999975302663479987788999999987