HHsearch alignment for GI: 254780526 and conserved domain: cd02067
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.83 E-value=0.9 Score=25.36 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEE---ECHHHHHHHHHHCCCCEEEEEEECCCCCCHH-HHHHHHHHCC--CCCCEECCCCCC
Q ss_conf 999999999999789889998---2858999999828996799990078966217-9998631013--321000024432
Q gi|254780526|r 9 ALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-LELPRIIRAH--SQVPLIGISDYP 82 (223)
Q Consensus 9 ~~~~~~l~~~L~~~g~~v~~~---~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g-~~l~~~lr~~--~~~pII~lt~~~ 82 (223)
T Consensus 13 ~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~-~~~~~~~~i~~l~~~g~~~i~v~vGG~-~ 90 (119)
T cd02067 13 DIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT-HMTLMKEVIEELKEAGLDDIPVLVGGA-I 90 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCCCEEEEECC-C
T ss_conf 78999999999978998998999999999999999709999999622024-268999999999976999985999899-8
Q ss_pred CCCCCCCCCCCCCEEEEECCC
Q ss_conf 100001112220100010233
Q gi|254780526|r 83 SLQTTLDFFDSGVDDVVNKPI 103 (223)
Q Consensus 83 ~~~~~i~~l~~GAddyl~KP~ 103 (223)
T Consensus 91 ~~~~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 91 VTRDFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred CCHHHHHHHHCCCCEEECCHH
T ss_conf 974399999869979977807