HHsearch alignment for GI: 254780526 and conserved domain: pfam00196
>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=97.29 E-value=0.00013 Score=49.59 Aligned_cols=51 Identities=29% Similarity=0.466 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1242101234432112883400899998652876577766136889999998601456777
Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 (223)
Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~ 208 (223)
T Consensus 3 ~LT~RE~~il~~l~~--G--~s~~eIA~~L------~is~~TV~~h~~~i~~Kl~v~nr~e 53 (58)
T pfam00196 3 SLSPREREVLRLLAA--G--KSNKEIADIL------GISEKTVKVHRSNIMRKLNVHSRVE 53 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 779999999999980--7--9999999997------8889999999999999809999999