HHsearch alignment for GI: 254780526 and conserved domain: pfam00196

>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=97.29  E-value=0.00013  Score=49.59  Aligned_cols=51  Identities=29%  Similarity=0.466  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             1242101234432112883400899998652876577766136889999998601456777
Q gi|254780526|r  148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD  208 (223)
Q Consensus       148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~  208 (223)
T Consensus         3 ~LT~RE~~il~~l~~--G--~s~~eIA~~L------~is~~TV~~h~~~i~~Kl~v~nr~e   53 (58)
T pfam00196         3 SLSPREREVLRLLAA--G--KSNKEIADIL------GISEKTVKVHRSNIMRKLNVHSRVE   53 (58)
T ss_pred             CCCHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             779999999999980--7--9999999997------8889999999999999809999999