HHsearch alignment for GI: 254780526 and conserved domain: pfam06490
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=97.78 E-value=0.0002 Score=48.38 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=71.5
Q ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHC-CCCCCEECCC
Q ss_conf 968970989999999999997898899982858999999828996799990078966217999863101-3321000024
Q gi|254780526|r 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGIS 79 (223)
Q Consensus 1 ~ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~-~~~~pII~lt 79 (223)
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~-~~~~~~~~~a~~v~~~-~~--~~~~~~l~~l~~~~p~~Pvlllg 76 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLS-AALLSSRWEALAVILG-SV--SGLADLLKALAKWDPHLPVLLLG 76 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHH-HHHHHCCCCEEEEEEC-CC--CCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 98998688899997999998649964995488988-9886378852999967-85--20999999999648899999987
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 4321000011122201000102333332100
Q gi|254780526|r 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110 (223)
Q Consensus 80 ~~~~~~~~i~~l~~GAddyl~KP~~~~eL~a 110 (223)
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qL~d 102 (109)
T pfam06490 77 EHDSAAEL-----ANVIGELEEPLNYPQLTD 102 (109)
T ss_pred CCCCHHHC-----CCEEEEECCCCCHHHHHH
T ss_conf 88752120-----552587078898799999