HHsearch alignment for GI: 254780526 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.72  E-value=0.0024  Score=41.60  Aligned_cols=55  Identities=24%  Similarity=0.364  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEE
Q ss_conf             10123443211288340089999865287657776613688999999860145677715778686303
Q gi|254780526|r  152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS  219 (223)
Q Consensus       152 ~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~  219 (223)
T Consensus         1 R~~~il~~L~~~~~~-vt~~~La~~l------~VSr~TV~rdi~~L~~~G------~~I~s~~g~GY~   55 (55)
T pfam08279         1 RLLQILELLLQAREP-ISGQELAEKL------GVSRRTIRRDIKALEALG------VPIESEPGRGYR   55 (55)
T ss_pred             CHHHHHHHHHHCCCC-CCHHHHHHHH------CCCHHHHHHHHHHHHHCC------CCEEECCCCCCC
T ss_conf             989999999976999-1899999996------988999999999999889------978846899998