HHsearch alignment for GI: 254780526 and conserved domain: smart00421
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=97.10 E-value=0.00026 Score=47.61 Aligned_cols=53 Identities=28% Similarity=0.500 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 124210123443211288340089999865287657776613688999999860145677715
Q gi|254780526|r 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 (223)
Q Consensus 148 ~LT~~E~~lL~~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I 210 (223)
T Consensus 3 ~LT~rE~~il~~l~~--G--~s~~eIA~~L------~is~~TV~~~~~~i~~Kl~v~~r~elv 55 (58)
T smart00421 3 SLTPREREVLRLLAE--G--LTNKEIAERL------GISEKTVKTHLSNIMRKLGVRSRTQAV 55 (58)
T ss_pred CCCHHHHHHHHHHHH--C--CCHHHHHHHH------CCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 618999999999981--7--9999999898------978989999999999984899999999