HHsearch results for GI: 254780526 and protein with PDBid: 1a04_A
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.96 E-value=8.5e-30 Score=206.78 Aligned_cols=192 Identities=18% Similarity=0.199 Sum_probs=156.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECC
Q ss_conf 68970989999999999997898--8999828589999998289967999900789662179998631013-32100002
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGV--SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGI 78 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~--~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~l 78 (223)
|||||||+.+++++..+|+..+. .|..+.+++++..+.....||++++|+.+ |+++|+++++.+++. +.+||+++
T Consensus 8 ILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~~~pdlvllD~~l--p~~~G~~~~~~~~~~~~~~~iivl 85 (215)
T 1a04_A 8 ILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM--PGMNGLETLDKLREKSLSGRIVVF 85 (215)
T ss_dssp EEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTS--TTSCHHHHHHHHHHSCCCSEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999929899999999999858992899997999999999974699689996888--998986232101124566554344
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 44321000011122201000102333332100000111222222211222222222222222222233212421012344
Q gi|254780526|r 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 (223)
Q Consensus 79 t~~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~ 158 (223)
|+.++.++.++++++||+||+.||++..++.++++++.++....+... ...+..+.........+....||+||+++|.
T Consensus 86 t~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~LT~rE~~vl~ 164 (215)
T 1a04_A 86 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEAL-TPVLAASLRANRATTERDVNQLTPRERDILK 164 (215)
T ss_dssp ECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTT-HHHHHHHC-------CCCGGGSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 367999999999984998986025999999999999984887568567-6788888762445457870208989999999
Q ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 321128834008999986528765777661368899999986014567
Q gi|254780526|r 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 (223)
Q Consensus 159 ~L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~ 206 (223)
+|+++ .|..+|++.+ .++.+||++|++||++||+...-
T Consensus 165 ll~~g----~sn~~IA~~L------~iS~~TV~~h~~~i~~KL~v~~r 202 (215)
T 1a04_A 165 LIAQG----LPNKMIARRL------DITESTVKVHVKHMLKKMKLKSR 202 (215)
T ss_dssp HHHTT----CCHHHHHHHH------TCCHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHH----CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 99986----6312679997------88687999999999998099988