HHsearch results for GI: 254780526 and protein with PDBid: 1kgs_A
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=100.00 E-value=0 Score=342.96 Aligned_cols=218 Identities=21% Similarity=0.334 Sum_probs=201.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCC-CCCCEECCCC
Q ss_conf 689709899999999999978988999828589999998289967999900789662179998631013-3210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~-~~~pII~lt~ 80 (223)
|||||||+.+++.+...|+..||.|..|.+++++..+.....||++++|+.+ |+++|+++++.+|+. +.+|||++|+
T Consensus 5 ILiVeDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~dliilD~~l--p~~~g~~~~~~ir~~~~~~pii~ls~ 82 (225)
T 1kgs_A 5 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIML--PVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCHHHHHHCCCCCCCEEECCC
T ss_conf 9999299999999999999879999998999999999972899899994677--65431010122111345675320233
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 32100001112220100010233333210000011122222-22112222222222222222222332124210123443
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~~-~~~~~~~~~~~~~~~~~~~~~~g~~i~LT~~E~~lL~~ 159 (223)
.++.++.++++++||||||.|||+++||.+|+++.+++... .......|++.++...++++.+|+.+.||++||+||++
T Consensus 83 ~~~~~~~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~ 162 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEY 162 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEEETTEEEETTTTEEEETTEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEECCHHHHHHHHH
T ss_conf 44167899999779985245899999999999999711334677533047644566550311289786265799999999
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEECC
Q ss_conf 211288340089999865287657776613688999999860145677715778686303138
Q gi|254780526|r 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 (223)
Q Consensus 160 L~~~~g~~vsr~~l~~~iwg~~~~~~~~~tv~~~I~rLRkKL~~~~~~~~I~tvrg~GY~l~~ 222 (223)
|++|+|+++||++|++++||. +...++|||++||+|||+||+..+....|+||||+||+|+.
T Consensus 163 L~~~~~~vvsr~~L~~~vwg~-~~~~~~~tl~~~I~rLR~KL~~~~~~~~I~tv~g~GY~l~~ 224 (225)
T 1kgs_A 163 LVMNKNRVVTKEELQEHLWSF-DDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD 224 (225)
T ss_dssp HHHTTTSCEEHHHHHHHCC------CHHHHHHHHHHHHHHHHHTTCSSCCEEEETTTEEEECC
T ss_pred HHHCCCEEECHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEE
T ss_conf 875243444299999987177-77876576999999999984577999948991360089823