HHsearch results for GI: 254780526 and protein with PDBid: 1s8n_A
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.92 E-value=1.4e-25 Score=180.25 Aligned_cols=117 Identities=11% Similarity=0.204 Sum_probs=108.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEECCCC
Q ss_conf 68970989999999999997898899-98285899999982899679999007896621799986310133210000244
Q gi|254780526|r 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 (223)
Q Consensus 2 ILiVeDd~~~~~~l~~~L~~~g~~v~-~~~~~~~~~~l~~~~~~d~~iid~~l~~~~~~g~~l~~~lr~~~~~pII~lt~ 80 (223)
|||||||+.+++.+...|+..||.|. .|.+++++..+.....||++++|+. |||+||+++|+.+|+.+++||||+|+
T Consensus 16 ILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~--MP~mdGle~~~~ir~~~~~piiilTa 93 (205)
T 1s8n_A 16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC--CCCCCHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9998298999999999999869979999899999999998379999999640--45860799999998569999899956
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210000111222010001023333321000001112222
Q gi|254780526|r 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 (223)
Q Consensus 81 ~~~~~~~i~~l~~GAddyl~KP~~~~eL~ari~a~lRr~~ 120 (223)
+++.++.++|+++||+|||+|||++++|+++|+..+++..
T Consensus 94 ~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~ 133 (205)
T 1s8n_A 94 FSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp GGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 7889999999982984214389999999999999998644