Query gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 397
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 19:50:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780527.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jo8_A Serine/threonine-protei 28.8 24 0.001 14.0 2.0 21 293-313 29-49 (51)
2 2fd4_A Avirulence protein AVRP 15.4 25 0.0011 13.9 -0.1 15 272-288 40-54 (122)
3 1htm_A Hemagglutinin HA1 chain 14.9 42 0.0018 12.4 0.9 14 272-285 6-19 (27)
4 1u9l_A Transcription elongatio 14.5 35 0.0015 12.9 0.4 24 111-134 24-47 (70)
5 2l1n_A Uncharacterized protein 13.8 45 0.0019 12.2 0.8 39 292-330 66-105 (120)
6 2fom_B Polyprotein; flavivirus 12.0 55 0.0023 11.6 2.3 23 374-396 133-155 (185)
7 3bz1_L Photosystem II reaction 11.2 41 0.0017 12.4 -0.1 17 43-59 2-18 (37)
8 2jo7_A Glycosylphosphatidylino 10.6 61 0.0026 11.3 0.8 15 121-135 151-165 (224)
9 2qnk_A 3-hydroxyanthranilate 3 10.4 17 0.00073 15.0 -2.2 96 33-135 2-103 (286)
10 1b22_A DNA repair protein RAD5 10.0 64 0.0027 11.1 0.8 24 111-134 43-66 (114)
No 1
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=28.83 E-value=24 Score=14.04 Aligned_cols=21 Identities=48% Similarity=0.551 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 115789887633676775304
Q gi|254780527|r 293 ESDFLYKKIQSGRQNILDALN 313 (397)
Q Consensus 293 esdflykkiqsgrqnildaln 313 (397)
|-+-|-++-|.-||-||||..
T Consensus 29 EieeLr~RYq~KRqPILdAie 49 (51)
T 2jo8_A 29 EIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHH
T ss_conf 999999998874343999975
No 2
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase; 1.80A {Pseudomonas syringae}
Probab=15.36 E-value=25 Score=13.87 Aligned_cols=15 Identities=47% Similarity=0.787 Sum_probs=10.4
Q ss_pred CCCEEEEEEECCCEEEE
Q ss_conf 20045545534844589
Q gi|254780527|r 272 PDNIVATLCLSGEKLSV 288 (397)
Q Consensus 272 pdnivatlclsgeklsv 288 (397)
||+ ||-||-||.||.
T Consensus 40 ~dd--aT~CLFGe~LSL 54 (122)
T 2fd4_A 40 TDD--VTHCLFGGELSL 54 (122)
T ss_dssp --C--CCBCTTSSBCCT
T ss_pred CCC--CCEEECCCCCCC
T ss_conf 987--743421674345
No 3
>1htm_A Hemagglutinin HA1 chain; influenza virus hemagglutinin, viral protein; 2.50A {Uncultured beta proteobacterium umtra-608}
Probab=14.91 E-value=42 Score=12.40 Aligned_cols=14 Identities=50% Similarity=0.695 Sum_probs=10.0
Q ss_pred CCCEEEEEEECCCE
Q ss_conf 20045545534844
Q gi|254780527|r 272 PDNIVATLCLSGEK 285 (397)
Q Consensus 272 pdnivatlclsgek 285 (397)
-||-.|||||.-..
T Consensus 6 ndnstatlclghha 19 (27)
T 1htm_A 6 NDNSTATLCLGHHA 19 (27)
T ss_pred CCCCEEEEEECCCC
T ss_conf 78851556411431
No 4
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=14.53 E-value=35 Score=12.91 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=20.0
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 224612455523670104554422
Q gi|254780527|r 111 EKDFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 111 ekdfpsiesfaskspqdiedisgf 134 (397)
+..|.|||..|.-++.++..|-||
T Consensus 24 ~EGF~siEeIAy~~~~eL~~Iegf 47 (70)
T 1u9l_A 24 EEGFSTLEELAYVPMKELLEIEGL 47 (70)
T ss_dssp HTTCCCHHHHHHSCHHHHTTSTTC
T ss_pred HHCCCCHHHHHCCCHHHHHHCCCC
T ss_conf 865597999875999999763155
No 5
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-2, protein structure initiative; NMR {Synechococcus elongatus}
Probab=13.76 E-value=45 Score=12.15 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred ECHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEHHHHHHH
Q ss_conf 511578988763-367677530437601100000110000
Q gi|254780527|r 292 VESDFLYKKIQS-GRQNILDALNFSGYTMDRFDVEFVRKD 330 (397)
Q Consensus 292 vesdflykkiqs-grqnildalnfsgytmdrfdvefvrkd 330 (397)
..|--|-..|-. -.|.+-.-|+|.||.++.|--.-.|..
T Consensus 66 pasv~LTRSIPke~KQlLK~~LgFkGYki~eL~PrrTRRA 105 (120)
T 2l1n_A 66 PATVKLTRSIPAPYKQLLKEELGFAGYSINELVPRKTRRA 105 (120)
T ss_dssp HHHHHHHHTSCGGGTTHHHHTTCCCCCCGGGCCHHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHH
T ss_conf 5204676306889999999855878745567162068899
No 6
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=12.03 E-value=55 Score=11.59 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=14.2
Q ss_pred CCCCCCEEECCCEEEEEECCEEE
Q ss_conf 43333303215508898404044
Q gi|254780527|r 374 GEKRSGLIYNKGEIIGIYSNYIY 396 (397)
Q Consensus 374 gekrsgliynkgeiigiysnyiy 396 (397)
|.--|-.|-..|++||+|-|=++
T Consensus 133 GtSGSPIin~~G~vVGLYGnGv~ 155 (185)
T 2fom_B 133 GTSGSPIVDKKGKVVGLYGNGVV 155 (185)
T ss_dssp GGTTCEEECTTSCEEEETTCEEE
T ss_pred CCCCCCEECCCCCEEEEECCCEE
T ss_conf 99999628799979999548478
No 7
>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* 3kzi_L*
Probab=11.16 E-value=41 Score=12.43 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCEEE
Q ss_conf 46898332233442014
Q gi|254780527|r 43 NKNPNKQDFDVQNKSLF 59 (397)
Q Consensus 43 nknpnkqdfdvqnkslf 59 (397)
..|||||..+....||+
T Consensus 2 ~pNpN~q~velNRtsLy 18 (37)
T 3bz1_L 2 EPNPNRQPVELNRTSLY 18 (37)
T ss_dssp CCCTTCCCBCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHH
T ss_conf 99977786520124299
No 8
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=10.62 E-value=61 Score=11.29 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=0.0
Q ss_pred HCCCCCCHHHHHHHC
Q ss_conf 236701045544220
Q gi|254780527|r 121 ASKSPQDIEDISGFL 135 (397)
Q Consensus 121 askspqdiedisgfl 135 (397)
++.+|-..|||||||
T Consensus 151 ~~psflt~eDIs~fL 165 (224)
T 2jo7_A 151 LTPTFLTSEDISGYL 165 (224)
T ss_dssp SSSCCSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHE
T ss_conf 189766487663321
No 9
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloenzyme, trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=10.41 E-value=17 Score=14.96 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHC----CCC--CCCCCCHHHHHHCCCCEEECCCCCCCCCCCCEEEEEE
Q ss_conf 6301443110468983322334420144320217----775--3222304553200211000224531546343478750
Q gi|254780527|r 33 EKRNNSTKTINKNPNKQDFDVQNKSLFEIFLTTI----PDA--DNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRD 106 (397)
Q Consensus 33 ekrnnstktinknpnkqdfdvqnkslfeifltti----pda--dnhihedeerlidndliynsykgamypsasqyftvrd 106 (397)
+++-|-.+-|.+|+..-.=-|-||-||.--++.. |.+ |-|+|+.+| .+-.++|.|.-..-.-=..++
T Consensus 2 ~~~~~~~~w~~~n~~~~~ppv~~~~~~~~~~~~~~~~gp~~r~~~H~h~~~E-------~fyvl~G~~~l~v~~~G~~~~ 74 (286)
T 2qnk_A 2 ERRLGVRAWVKENRGSFQPPVCNKLMHQEQLKVMFIGGPNTRKDYHIEEGEE-------VFYQLEGDMVLRVLEQGKHRD 74 (286)
T ss_dssp TTEEEHHHHHHHTGGGSSTTTCEEEEEESSEEEEEECSCBCCCCEEECSSCE-------EEEEEESCEEEEEEETTEEEE
T ss_pred CCCCCHHHHHHHCHHHCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCE-------EEEEEECEEEEEEECCCCEEE
T ss_conf 7755478997758653389966314514871899967999777463488431-------999992679999965995789
Q ss_pred CCCCCCCCCCHHHHHCCCCCCHHHHHHHC
Q ss_conf 45432246124555236701045544220
Q gi|254780527|r 107 LSASEKDFPSIESFASKSPQDIEDISGFL 135 (397)
Q Consensus 107 lsasekdfpsiesfaskspqdiedisgfl 135 (397)
....+.|+-.+-+-.-.|||-.+|--|++
T Consensus 75 ~~l~~GDi~~~P~~v~Hs~q~~gd~~g~v 103 (286)
T 2qnk_A 75 VVIRQGEIFLLPARVPHSPQRFANTVGLV 103 (286)
T ss_dssp EEECTTEEEEECTTCCEEEEECTTCEEEE
T ss_pred EEECCCCEEEECCCCCCCCEECCCCCEEE
T ss_conf 87089988995899971654548986699
No 10
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=10.00 E-value=64 Score=11.14 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 224612455523670104554422
Q gi|254780527|r 111 EKDFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 111 ekdfpsiesfaskspqdiedisgf 134 (397)
+..|.+|++.+.-+|.++..|.||
T Consensus 43 ~aG~~Tv~~Ia~~t~~eL~~i~Gi 66 (114)
T 1b22_A 43 EAGFHTVEAVAYAPKKELINIKGI 66 (114)
T ss_dssp TTCCSSGGGBTSSBHHHHHTTTTC
T ss_pred HCCCCHHHHHHHCCHHHHHHCCCC
T ss_conf 969744999984899999766698
Done!