Query gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 397
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 09:44:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780527.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bjha_ a.39.2.1 (A:) Pheromon 32.6 9.2 0.00067 15.2 1.7 10 155-164 44-53 (117)
2 d1szpa1 a.60.4.1 (A:81-144) DN 20.0 15 0.0011 13.8 0.8 24 111-134 21-44 (64)
3 d1p42a2 d.14.1.7 (A:128-280) U 18.7 18 0.0013 13.2 1.0 19 321-339 97-115 (147)
4 d1u9la_ a.60.4.2 (A:) Transcri 16.4 17 0.0013 13.4 0.4 24 111-134 24-47 (68)
5 d1pzna1 a.60.4.1 (A:35-95) DNA 14.8 26 0.0019 12.1 1.2 24 111-134 19-42 (61)
6 d1b22a_ a.60.4.1 (A:) DNA repa 13.1 28 0.0021 11.9 0.8 22 113-134 30-51 (70)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 12.9 19 0.0014 13.0 -0.1 18 43-60 2-19 (37)
8 d1hh2p3 d.52.3.1 (P:277-344) T 11.9 32 0.0023 11.6 3.6 45 281-325 22-66 (68)
9 d1ilr1_ b.42.1.2 (1:) Interleu 11.9 32 0.0023 11.6 1.1 39 237-275 11-49 (145)
10 d1vr3a1 b.82.1.6 (A:1-179) Aci 10.7 20 0.0015 12.9 -0.5 26 23-48 48-73 (179)
No 1
>d3bjha_ a.39.2.1 (A:) Pheromone-binding protein asp1 {Common honeybee (Apis mellifera) [TaxId: 7460]}
Probab=32.61 E-value=9.2 Score=15.22 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q ss_conf 1018889975
Q gi|254780527|r 155 LCTITDVFSQ 164 (397)
Q Consensus 155 lctitdvfsq 164 (397)
-|-+.=+|-+
T Consensus 44 kC~~~C~~~k 53 (117)
T d3bjha_ 44 TCYMYCLLEA 53 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 5799999999
No 2
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.98 E-value=15 Score=13.82 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 224612455523670104554422
Q gi|254780527|r 111 EKDFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 111 ekdfpsiesfaskspqdiedisgf 134 (397)
+..|.++++.|.-+|.++..|.||
T Consensus 21 ~aG~~Tve~ia~~t~~~L~~i~Gi 44 (64)
T d1szpa1 21 ESGLHTAEAVAYAPRKDLLEIKGI 44 (64)
T ss_dssp TTSCCSHHHHHHSCSHHHHTSTTC
T ss_pred HCCCCCHHHHHHCCHHHHHHCCCC
T ss_conf 969974999986899999776797
No 3
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=18.71 E-value=18 Score=13.25 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.8
Q ss_pred EEEHHHHHHHHHHHHHHHH
Q ss_conf 0000110000078888767
Q gi|254780527|r 321 RFDVEFVRKDSLDLLKDSM 339 (397)
Q Consensus 321 rfdvefvrkdsldllkdsm 339 (397)
||+-||||..-||++-|-.
T Consensus 97 R~~~E~vRHKiLD~iGDl~ 115 (147)
T d1p42a2 97 RYENEPVRHKVFDLIGDLY 115 (147)
T ss_dssp SSTTHHHHHHHHHHHHHHG
T ss_pred CCCCCCCHHHHHHHCCCHH
T ss_conf 4422012366655406375
No 4
>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}
Probab=16.36 E-value=17 Score=13.39 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=20.4
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 224612455523670104554422
Q gi|254780527|r 111 EKDFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 111 ekdfpsiesfaskspqdiedisgf 134 (397)
...|.|||..|.-++.++..|-||
T Consensus 24 ~EGF~siEeIAyv~~~eL~~Iegf 47 (68)
T d1u9la_ 24 EEGFSTLEELAYVPMKELLEIEGL 47 (68)
T ss_dssp HTTCCCHHHHHHSCHHHHTTSTTC
T ss_pred HHCCCCHHHHHCCCHHHHHHHCCC
T ss_conf 846586999865999999770054
No 5
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=14.79 E-value=26 Score=12.12 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 224612455523670104554422
Q gi|254780527|r 111 EKDFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 111 ekdfpsiesfaskspqdiedisgf 134 (397)
+.-|.+++..+.-+|.++..|.|+
T Consensus 19 ~~g~~sv~~l~~a~~~eL~~i~Gi 42 (61)
T d1pzna1 19 EAGYDTLEAIAVASPIELKEVAGI 42 (61)
T ss_dssp TTTCCSHHHHHTCCHHHHHHHHCC
T ss_pred HHCCCCHHHHHHCCHHHHHHCCCC
T ss_conf 944999999985999999777999
No 6
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=28 Score=11.90 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=12.1
Q ss_pred CCCCHHHHHCCCCCCHHHHHHH
Q ss_conf 4612455523670104554422
Q gi|254780527|r 113 DFPSIESFASKSPQDIEDISGF 134 (397)
Q Consensus 113 dfpsiesfaskspqdiedisgf 134 (397)
.|.+|++.+.-+|.|+..|.||
T Consensus 30 G~~Tv~~i~~at~~~L~~i~G~ 51 (70)
T d1b22a_ 30 GFHTVEAVAYAPKKELINIKGI 51 (70)
T ss_dssp CCSSGGGBTSSBHHHHHTTTTC
T ss_pred CCCHHHHHHHCCHHHHHHCCCC
T ss_conf 8634999984899999876797
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.85 E-value=19 Score=13.02 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCEEEE
Q ss_conf 468983322334420144
Q gi|254780527|r 43 NKNPNKQDFDVQNKSLFE 60 (397)
Q Consensus 43 nknpnkqdfdvqnkslfe 60 (397)
..|||+|..+....||+-
T Consensus 2 ~pnpn~q~veLNrtsLy~ 19 (37)
T d2axtl1 2 EPNPNRQPVELNRTSLYL 19 (37)
T ss_dssp CCCSSCCCBCCCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHH
T ss_conf 999888863100444999
No 8
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}
Probab=11.89 E-value=32 Score=11.56 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=35.1
Q ss_pred ECCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHH
Q ss_conf 348445899995115789887633676775304376011000001
Q gi|254780527|r 281 LSGEKLSVKLRVESDFLYKKIQSGRQNILDALNFSGYTMDRFDVE 325 (397)
Q Consensus 281 lsgeklsvklrvesdflykkiqsgrqnildalnfsgytmdrfdve 325 (397)
+.-+.-.+...|+.+-+-.-|-.+-||+--|-...||..|--.++
T Consensus 22 ~de~~~~~~v~V~~~qls~AIGk~G~NvrLas~Ltg~~idI~s~~ 66 (68)
T d1hh2p3 22 LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPIM 66 (68)
T ss_dssp EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEECC
T ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECC
T ss_conf 728888899998831224320678661999999879877458704
No 9
>d1ilr1_ b.42.1.2 (1:) Interleukin-1 receptor antagonist protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=32 Score=11.56 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=18.0
Q ss_pred HCCCCEEEEEECCCCEEECCCCCEEEEEEEECCCCCCCE
Q ss_conf 350212578852342232046524799999458982004
Q gi|254780527|r 237 LNQKSFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNI 275 (397)
Q Consensus 237 lnqksfmrvtmipesvhytdtgsikaltiqmkpnspdni 275 (397)
.+||+|+...-.--.+|....-.+...+|-|-|+.+..+
T Consensus 11 ~~qK~lvL~~~~L~A~~l~~~~~~~~~~i~~~~~~~~pV 49 (145)
T d1ilr1_ 11 VNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHAL 49 (145)
T ss_dssp TTCCEEEEETTEEEEECCCGGGGGGCCCEEEEEETTTEE
T ss_pred CCCCEEEEECCEEEEEECCCCCCCCEEEEEEEECCCCEE
T ss_conf 324389999999999624899844307999886589768
No 10
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.69 E-value=20 Score=12.88 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 60123467776301443110468983
Q gi|254780527|r 23 NDDRLNSIQEEKRNNSTKTINKNPNK 48 (397)
Q Consensus 23 nddrlnsiqeekrnnstktinknpnk 48 (397)
++..++.|++|+.-.+.-.|+-.|.+
T Consensus 48 ~~~~l~~l~~ergY~~~D~i~l~p~~ 73 (179)
T d1vr3a1 48 NDPELEKIRKMRNYSWMDIITICKDT 73 (179)
T ss_dssp SCHHHHHHHHHHTCCEEEEEEESTTT
T ss_pred CCHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 44788999996599814799989765
Done!