BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780527|ref|YP_003064940.1| hypothetical protein
CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
         (397 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 397

 Score =  815 bits (2105), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE 60
           MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE
Sbjct: 1   MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE 60

Query: 61  IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF 120
           IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF
Sbjct: 61  IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF 120

Query: 121 ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK 180
           ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK
Sbjct: 121 ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK 180

Query: 181 EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK 240
           EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK
Sbjct: 181 EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK 240

Query: 241 SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK 300
           SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK
Sbjct: 241 SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK 300

Query: 301 IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY 360
           IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY
Sbjct: 301 IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY 360

Query: 361 FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV 397
           FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV
Sbjct: 361 FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV 397


>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 529

 Score = 27.3 bits (59), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 291 RVESDFLYKKIQSGRQNILD 310
           R++SDFL   IQ  RQ+IL+
Sbjct: 356 RIKSDFLIHNIQKNRQHILE 375


>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 526

 Score = 24.3 bits (51), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 189 LNPVDFLLEKQLDTASLGEEICNLKGF 215
           L  +D  L+K++    + EE+C++ G 
Sbjct: 417 LEGIDITLQKKIRELGVSEELCSIPGI 443


>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 957

 Score = 24.3 bits (51), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 336 KDSMNYCAQQQGFTHSNEFEKK 357
           K+S +YC ++ G  H+ E E+K
Sbjct: 538 KESESYCPEKLGLLHNGENERK 559


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,011
Number of Sequences: 1233
Number of extensions: 11696
Number of successful extensions: 21
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 8
length of query: 397
length of database: 328,796
effective HSP length: 76
effective length of query: 321
effective length of database: 235,088
effective search space: 75463248
effective search space used: 75463248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 39 (19.6 bits)