Query gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs 40 out of 42
Neff 4.5
Searched_HMMs 13730
Date Wed Jun 1 09:51:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780528.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ntca_ a.4.1.12 (A:) DNA-bind 51.8 5.8 0.00042 16.2 3.2 56 80-141 26-81 (91)
2 d2np3a2 a.121.1.1 (A:100-211) 40.8 4.2 0.00031 17.0 1.0 100 62-177 2-103 (112)
3 d2fo1e1 d.211.1.1 (E:1021-1297 35.5 11 0.00076 14.7 3.0 52 57-108 49-100 (277)
4 d1uoha_ d.211.1.1 (A:) 26S pro 33.7 11 0.00081 14.5 2.2 61 73-133 28-90 (223)
5 d2fxta1 d.17.4.13 (A:234-425) 15.2 8.9 0.00065 15.1 -1.3 78 35-116 17-98 (192)
6 d2cw9a1 d.17.4.13 (A:270-451) 11.1 35 0.0025 11.5 4.4 82 35-116 3-88 (182)
7 d1hxia_ a.118.8.1 (A:) Peroxin 10.4 37 0.0027 11.4 10.1 96 110-209 16-111 (112)
8 d1ycsb1 d.211.1.1 (B:327-456) 10.3 37 0.0027 11.4 3.0 55 40-105 3-57 (130)
9 d1myoa_ d.211.1.1 (A:) Myotrop 8.5 44 0.0032 10.9 2.1 23 83-105 69-91 (118)
10 d2bwba1 a.5.2.1 (A:328-371) DS 8.1 46 0.0033 10.8 1.6 19 76-97 18-36 (44)
No 1
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=51.85 E-value=5.8 Score=16.20 Aligned_cols=56 Identities=7% Similarity=0.008 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCC
Q ss_conf 33799999897489889999998618898432699999999726987999998312671003
Q gi|254780528|r 80 RNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDN 141 (396)
Q Consensus 80 rNv~Aa~iY~lSGG~P~~lr~l~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~l 141 (396)
.+++-.+-..++-|++..++..+ ..+++.++.-++++..|...+|.+.|. |...++
T Consensus 26 ~~L~~~~~~~l~~~~~~~l~~~~-----~~~E~~lI~~aL~~~~Gn~~~AA~~LG-I~R~TL 81 (91)
T d1ntca_ 26 TLLAQWADRALRSGHQNLLSEAQ-----PELERTLLTTALRHTQGHKQEAARLLG-WGAATL 81 (91)
T ss_dssp HHHHHHHHHHHTTTCCSHHHHHH-----HHHHHHHHHHHHHHTTTCTTHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHC-CCHHHH
T ss_conf 99999999998738841799999-----999999999999995995999999979-889999
No 2
>d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=40.79 E-value=4.2 Score=17.01 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCHHHHCCHHHHHHHHHHHHC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHC
Q ss_conf 999899861696760562337999998974-8988999999861889843269999999972698799999831267100
Q gi|254780528|r 62 KETGVQLRATHMDVFVDNRNIDAVWIYTII-SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKD 140 (396)
Q Consensus 62 ~~i~~~l~~a~~~vw~d~rNv~Aa~iY~lS-GG~P~~lr~l~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~ 140 (396)
+++++++...=-+.|++|.--....+-+-| .+||++-+.+.. .+...++.-+-..+.|...+.+..|
T Consensus 2 d~lGerl~~~~l~~we~~~~~~~l~allrsa~~~~~aa~~lR~-----~~~~~~~~~la~~l~~~da~~RA~L------- 69 (112)
T d2np3a2 2 DGIGERVVRAHLSVWDDVSSRPALMTMVRSAAIHRAAAARLRE-----TATGILARALGGVITGEDAMLRTSM------- 69 (112)
T ss_dssp TTHHHHHHHHHHHHHHHHHTCHHHHHHHHCCH-------HHHH-----HHHHHHHHHHTTTCCSTTHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHHHHHHH-------
T ss_conf 7399999999987740866331199999983178899999999-----9999999999986489988999999-------
Q ss_pred CCCCCCHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 3610001388-876666432198999999999999678
Q gi|254780528|r 141 NTRGIVPYLH-LLIGRAMMPFSSQQAVHFFDYVRLTSP 177 (396)
Q Consensus 141 lp~~lg~~la-Lv~a~l~~~~dp~~Al~llD~aRLlaP 177 (396)
++.++. +....-..+..|-..+..=+.+++++|
T Consensus 70 ----v~sql~Gl~~~Ryvl~~eplas~~~eelv~~laP 103 (112)
T d2np3a2 70 ----VATQLVGLAMMRYVAHLEPLASADTDTVARHYGR 103 (112)
T ss_dssp ----HHHHHHHHHHHHHTSCCTTGGGSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf ----9999999999988971586667999999999999
No 3
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=35.48 E-value=11 Score=14.65 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 9999999989986169676056233799999897489889999998618898
Q gi|254780528|r 57 IPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKG 108 (396)
Q Consensus 57 q~~Ll~~i~~~l~~a~~~vw~d~rNv~Aa~iY~lSGG~P~~lr~l~~~d~~~ 108 (396)
-..|+......+.....++..-..+.+-++.|+...|++++++.|++.+...
T Consensus 49 v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~ 100 (277)
T d2fo1e1 49 SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 100 (277)
T ss_dssp CTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999965236798769976454788885100343333333333332232223
No 4
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.69 E-value=11 Score=14.51 Aligned_cols=61 Identities=8% Similarity=-0.108 Sum_probs=33.5
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHH--HHHHHHHHCCCHHHHHHHH
Q ss_conf 676056233799999897489889999998618898432699--9999997269879999983
Q gi|254780528|r 73 MDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAI--VYALKKYFSGQLEESSKEL 133 (396)
Q Consensus 73 ~~vw~d~rNv~Aa~iY~lSGG~P~~lr~l~~~d~~~~~d~~L--~~g~laY~~Gr~~~a~~~L 133 (396)
..+-.-+.+.+-++.|+...|+.+.++.++............ .--..+...|..+-++.++
T Consensus 28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll 90 (223)
T d1uoha_ 28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 90 (223)
T ss_dssp GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 747674899988899999851102433222223333322222223322222211110167774
No 5
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.24 E-value=8.9 Score=15.08 Aligned_cols=78 Identities=6% Similarity=0.076 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCHHHHCCH-HHHHH-HHHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf 99999999999965--9889999999999999899861696760562-33799-99989748988999999861889843
Q gi|254780528|r 35 CVRSLQRALDEAMR--GDISLQKKIPDIVKETGVQLRATHMDVFVDN-RNIDA-VWIYTIISQDLSVVDDLIAKDTKGYF 110 (396)
Q Consensus 35 lvRSLq~lQD~Va~--Gd~sA~~~q~~Ll~~i~~~l~~a~~~vw~d~-rNv~A-a~iY~lSGG~P~~lr~l~~~d~~~~~ 110 (396)
+||++..++|+|.. +.....+..+ -+.+++ -..+++.|..- ++..- -++=+++-|+-.+|+.+++.+....|
T Consensus 17 ~v~~~r~i~d~~~~~f~ete~~~~l~-~ik~~D---p~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~lls~~vy~~f 92 (192)
T d2fxta1 17 LIVVMRKITNKVGGFFAETESSRVYS-QFKLMD---PTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVY 92 (192)
T ss_dssp HHHHHHHHHTTTTCCBCCCCSHHHHH-HHHHHC---TTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHH
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHH-HHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 05621020101244435478999999-999878---89998999999999999999999985788999987309999999
Q ss_pred CHHHHH
Q ss_conf 269999
Q gi|254780528|r 111 DIAIVY 116 (396)
Q Consensus 111 d~~L~~ 116 (396)
...+-+
T Consensus 93 ~~~I~~ 98 (192)
T d2fxta1 93 AAQQKI 98 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 6
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.12 E-value=35 Score=11.53 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCC-HHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf 9999999999996--5988999999999999989986169676056-233-79999989748988999999861889843
Q gi|254780528|r 35 CVRSLQRALDEAM--RGDISLQKKIPDIVKETGVQLRATHMDVFVD-NRN-IDAVWIYTIISQDLSVVDDLIAKDTKGYF 110 (396)
Q Consensus 35 lvRSLq~lQD~Va--~Gd~sA~~~q~~Ll~~i~~~l~~a~~~vw~d-~rN-v~Aa~iY~lSGG~P~~lr~l~~~d~~~~~ 110 (396)
+||.-+.+-|+|. .|+.-.....-.-|++|-..=-..+.+.|.+ .++ ..-.++=+++-|+...|+.++..+...+|
T Consensus 3 ~~r~~~~~~~~v~~~~~~~~~~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD~~~L~~llt~~~~~~f 82 (182)
T d2cw9a1 3 FIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQL 82 (182)
T ss_dssp HHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 23345665310455305777878899999999966889998999999999999999999871679999998509999999
Q ss_pred CHHHHH
Q ss_conf 269999
Q gi|254780528|r 111 DIAIVY 116 (396)
Q Consensus 111 d~~L~~ 116 (396)
...+-+
T Consensus 83 ~~~i~~ 88 (182)
T d2cw9a1 83 AHPIQQ 88 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 7
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=10.39 E-value=37 Score=11.38 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 32699999999726987999998312671003610001388876666432198999999999999678529999987767
Q gi|254780528|r 110 FDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189 (396)
Q Consensus 110 ~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dp~~Al~llD~aRLlaPGTLvEEAALRRs 189 (396)
.+...-.|...+-.|+..+|...+.++-.. -|...-.+..|... .....+..+|+..|..+--+-|... ++=....
T Consensus 16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~la 91 (112)
T d1hxia_ 16 HENPMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLT-QAENEKDGLAIIALNHARMLDPKDI--AVHAALA 91 (112)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCC--CCHHHHH
T ss_conf 899999999999876058999988610112-11110012335456-4101258774100000111111000--0037899
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q ss_conf 88752252589999999999
Q gi|254780528|r 190 LEITQNEVGERAFGYIRAYV 209 (396)
Q Consensus 190 i~la~~g~~~k~~~~a~~Y~ 209 (396)
+.....|+.++...+.++|+
T Consensus 92 ~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
T ss_conf 99999789999999999981
No 8
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.26 E-value=37 Score=11.35 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 999999965988999999999999989986169676056233799999897489889999998618
Q gi|254780528|r 40 QRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKD 105 (396)
Q Consensus 40 q~lQD~Va~Gd~sA~~~q~~Ll~~i~~~l~~a~~~vw~d~rNv~Aa~iY~lSGG~P~~lr~l~~~d 105 (396)
..+-+.+..|+.... ..|++. .++++.- ..+.+-++.|+...|++..++.+++.+
T Consensus 3 ~lL~~A~~~G~~~~v---~~Ll~~------g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g 57 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLV---QRIIYE------VDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFG 57 (130)
T ss_dssp HHHHHHHHHTCHHHH---HHHTST------TSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHH---HHHHHC------CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999993999999---999986------9975610--021111112222222222222222222
No 9
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.46 E-value=44 Score=10.92 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 99999897489889999998618
Q gi|254780528|r 83 DAVWIYTIISQDLSVVDDLIAKD 105 (396)
Q Consensus 83 ~Aa~iY~lSGG~P~~lr~l~~~d 105 (396)
.-++.|+...|++++++.|++.+
T Consensus 69 ~tpLh~A~~~~~~~~v~~Ll~~G 91 (118)
T d1myoa_ 69 ITPLLSAVYEGHVSCVKLLLSKG 91 (118)
T ss_dssp SCHHHHHHTTTCCHHHHHHHTTC
T ss_pred CCCHHHHHHCCCHHHHHHHHCCC
T ss_conf 21022332047324324331020
No 10
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.06 E-value=46 Score=10.82 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=10.6
Q ss_pred HCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 0562337999998974898899
Q gi|254780528|r 76 FVDNRNIDAVWIYTIISQDLSV 97 (396)
Q Consensus 76 w~d~rNv~Aa~iY~lSGG~P~~ 97 (396)
+++.+|++|.. .+|||-..
T Consensus 18 ~d~~~Ni~AL~---~t~GdV~~ 36 (44)
T d2bwba1 18 FDFDRNVAALR---RSGGSVQG 36 (44)
T ss_dssp CCHHHHHHHHH---HHTTCHHH
T ss_pred CCHHHHHHHHH---HCCCCHHH
T ss_conf 96899999999---94998999
Done!