RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus
Liberibacter asiaticus str. psy62]
         (396 letters)



>gnl|CDD|183755 PRK12798, PRK12798, chemotaxis protein; Reviewed.
          Length = 421

 Score =  163 bits (415), Expect = 7e-41
 Identities = 104/417 (24%), Positives = 175/417 (41%), Gaps = 35/417 (8%)

Query: 7   ICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGV 66
           +     A     + A   D    + PY+ VRSLQ   D    GD S  +    ++     
Sbjct: 12  LALAGPAAGTAAAAAQTGD---VLEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDE 68

Query: 67  QLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQL 126
           +LRA   +V+ D RN+DA  IY +   + + +  L+A+D  G FD  +      Y SG+ 
Sbjct: 69  RLRAADPEVWDDPRNVDAALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRG 128

Query: 127 EESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIAL 186
            E+ K L+ +  +     +  YL L+ G  M+      A+   D  RL +PGT +EE AL
Sbjct: 129 REARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAAL 188

Query: 187 RNLLEIT-QNEVGERAFGYIRAYVTQFHHSIY----KDHFISVLLRFFLHGQLKLPDEDI 241
           R  L I  Q    ++     R Y+ +F HS Y       F+ +++R     +++  D  +
Sbjct: 189 RRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD--DEIR--DARL 244

Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
           V  +SF   E QR +YL+IA+ ++I GK ++   A ++  ++ D     D A  +LY   
Sbjct: 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDS-ADAARARLYRGA 303

Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLI--------DIDFE- 352
             +   D  S       I    L E+DR L +A+  +  ++ ++          D   E 
Sbjct: 304 ALVASDDAESALEELSQIDRDKLSERDRALLEAARSVARQVRRAPATSPAKRSADAASEP 363

Query: 353 ----HIQKDLLLDKKEPRHTNVSM---------GIESFIKKNRSQIESIDVLLAEAR 396
                                V            ++ F+ + RS+++ ID LL +  
Sbjct: 364 PSAVAPAPQAPAQLPLSVPVEVDSNSARTRSDPDLQKFVARARSKLDEIDALLKKEG 420


>gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated.
          Length = 426

 Score = 29.6 bits (67), Expect = 1.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 173 RLTSPGTFLEEIALRNLL--EITQNEVGERAFGYIRAYVTQ 211
           R+ + GT LE IAL   L   +TQ  + ERA  Y    V +
Sbjct: 70  RVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVAR 110


>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional.
          Length = 447

 Score = 27.6 bits (62), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 278 KQLKRIIDRL-DYKDLATIQLYENILNIPFVDIM-SLQRS 315
           ++L    + L DY++L      + IL  P  DIM SL RS
Sbjct: 106 EELAEFTELLGDYRELPDGFTRDMILKAPSKDIMNSLARS 145


>gnl|CDD|178981 PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
          Provisional.
          Length = 271

 Score = 27.0 bits (61), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 21 ATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIP 58
            + +L+      +  R LQ+A    +  DISL K++P
Sbjct: 65 PEEDNLI-----VRAARLLQKATGTPLGADISLDKRLP 97


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,552,050
Number of extensions: 440363
Number of successful extensions: 1047
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 14
Length of query: 396
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 301
Effective length of database: 3,941,713
Effective search space: 1186455613
Effective search space used: 1186455613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.1 bits)