RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62] (396 letters) >gnl|CDD|183755 PRK12798, PRK12798, chemotaxis protein; Reviewed. Length = 421 Score = 163 bits (415), Expect = 7e-41 Identities = 104/417 (24%), Positives = 175/417 (41%), Gaps = 35/417 (8%) Query: 7 ICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGV 66 + A + A D + PY+ VRSLQ D GD S + ++ Sbjct: 12 LALAGPAAGTAAAAAQTGD---VLEPYKLVRSLQLLQDSVAAGDHSAHEMQRFLLGTIDE 68 Query: 67 QLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQL 126 +LRA +V+ D RN+DA IY + + + + L+A+D G FD + Y SG+ Sbjct: 69 RLRAADPEVWDDPRNVDAALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYLSGRG 128 Query: 127 EESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIAL 186 E+ K L+ + + + YL L+ G M+ A+ D RL +PGT +EE AL Sbjct: 129 REARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAAL 188 Query: 187 RNLLEIT-QNEVGERAFGYIRAYVTQFHHSIY----KDHFISVLLRFFLHGQLKLPDEDI 241 R L I Q ++ R Y+ +F HS Y F+ +++R +++ D + Sbjct: 189 RRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD--DEIR--DARL 244 Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301 V +SF E QR +YL+IA+ ++I GK ++ A ++ ++ D D A +LY Sbjct: 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDS-ADAARARLYRGA 303 Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLI--------DIDFE- 352 + D S I L E+DR L +A+ + ++ ++ D E Sbjct: 304 ALVASDDAESALEELSQIDRDKLSERDRALLEAARSVARQVRRAPATSPAKRSADAASEP 363 Query: 353 ----HIQKDLLLDKKEPRHTNVSM---------GIESFIKKNRSQIESIDVLLAEAR 396 V ++ F+ + RS+++ ID LL + Sbjct: 364 PSAVAPAPQAPAQLPLSVPVEVDSNSARTRSDPDLQKFVARARSKLDEIDALLKKEG 420 >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated. Length = 426 Score = 29.6 bits (67), Expect = 1.4 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 173 RLTSPGTFLEEIALRNLL--EITQNEVGERAFGYIRAYVTQ 211 R+ + GT LE IAL L +TQ + ERA Y V + Sbjct: 70 RVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVAR 110 >gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional. Length = 447 Score = 27.6 bits (62), Expect = 6.0 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 278 KQLKRIIDRL-DYKDLATIQLYENILNIPFVDIM-SLQRS 315 ++L + L DY++L + IL P DIM SL RS Sbjct: 106 EELAEFTELLGDYRELPDGFTRDMILKAPSKDIMNSLARS 145 >gnl|CDD|178981 PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional. Length = 271 Score = 27.0 bits (61), Expect = 7.9 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 21 ATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIP 58 + +L+ + R LQ+A + DISL K++P Sbjct: 65 PEEDNLI-----VRAARLLQKATGTPLGADISLDKRLP 97 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.140 0.392 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,552,050 Number of extensions: 440363 Number of successful extensions: 1047 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1043 Number of HSP's successfully gapped: 14 Length of query: 396 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 301 Effective length of database: 3,941,713 Effective search space: 1186455613 Effective search space used: 1186455613 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.1 bits)