RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus
Liberibacter asiaticus str. psy62]
         (396 letters)



>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region;
           nudix fold, hydrolase; 1.90A {Escherichia coli} (A:)
          Length = 209

 Score = 28.7 bits (63), Expect = 1.4
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 1/76 (1%)

Query: 177 PGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKL 236
            G  +E++A R  +E     V                          V            
Sbjct: 101 EGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA 160

Query: 237 PDEDIVFTISFFSLEE 252
            + + +  +   S E+
Sbjct: 161 DENEDI-RVHVVSREQ 175


>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase,
           hydrolase; 2.00A {Deinococcus radiodurans} (A:)
          Length = 145

 Score = 28.5 bits (63), Expect = 1.7
 Identities = 11/76 (14%), Positives = 15/76 (19%), Gaps = 5/76 (6%)

Query: 177 PGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKL 236
            G  L   A R LLE                    +            LL   +      
Sbjct: 43  KGEDLGAAAARELLEEVGGAA-----SEWVPLPGFYPQPSISGVVFYPLLALGVTLGAAQ 97

Query: 237 PDEDIVFTISFFSLEE 252
            ++          L E
Sbjct: 98  LEDTETIERVVLPLAE 113


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.3 bits (58), Expect = 7.4
 Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 21/48 (43%)

Query: 153 IGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGER 200
           +   +M   S   V F+                 R +    Q  V  R
Sbjct: 2   LAD-VMSIESLVEVVFY-----------------RGMT--MQVAV-PR 28


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,991,110
Number of extensions: 139911
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 8
Length of query: 396
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 306
Effective length of database: 1,913,599
Effective search space: 585561294
Effective search space used: 585561294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)