RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus
Liberibacter asiaticus str. psy62]
         (396 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 61.1 bits (148), Expect = 4e-10
 Identities = 90/494 (18%), Positives = 152/494 (30%), Gaps = 204/494 (41%)

Query: 17  FFSFATDQDLVRTIVPYQCVRSLQRALDEA----MRG-DI-SLQKKIPDIVKETGVQ--- 67
           F  + +       +  +  V  L   L E     + G DI +L  K+      T V+   
Sbjct: 64  FLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121

Query: 68  -LRATHMDVFVDNRNI--------------DAVWIYTIIS-QDLSVVDDLIAKDTKGYFD 111
            ++       +  R                    +  I   Q           +T  YF+
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG----------NTDDYFE 171

Query: 112 -IAIVYALKKYFSGQL-EESSKELSKI-KDKDN-----TRGI-----------VP---YL 149
            +  +Y       G L + S++ LS++ +   +     T+G+            P   YL
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 150 HL-------LIGRAMMPFSSQQAVHFFDYV--RLT--SPGTFLEEIALRNLLE-IT---Q 194
            L       LIG         Q  H+   V  +L   +PG        R+ L+  T   Q
Sbjct: 232 -LSIPISCPLIGVI-------QLAHY--VVTAKLLGFTPGEL------RSYLKGATGHSQ 275

Query: 195 NEVGERAFGYIRAYVT-------QFHHSIYKDHFISVLLRFF--LHGQLKLPDEDIVFTI 245
                   G + A           F  S+ K   I+VL  FF  +      P+  +  +I
Sbjct: 276 --------GLVTAVAIAETDSWESFFVSVRKA--ITVL--FFIGVRCYEAYPNTSLPPSI 323

Query: 246 SFFSLE--EQRAIY-LKIAQNSVISGKRKIGFLAIKQLKRIIDRL-----DYKDLATIQL 297
              SLE  E      L     S+ S       L  +Q++  +++        K +  I L
Sbjct: 324 LEDSLENNEGVPSPML-----SI-SN------LTQEQVQDYVNKTNSHLPAGKQVE-ISL 370

Query: 298 ---YENI-----------LN----------------IPFVDIMSLQR-----------ST 316
               +N+           LN                IPF    S +R           ++
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF----S-ERKLKFSNRFLPVAS 425

Query: 317 CNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP-RHTNVSMGIE 375
              P++S       L  AS++I  ++ K+ +  +     KD+ +    P   T    G  
Sbjct: 426 ---PFHS-----HLLVPASDLINKDLVKNNVSFN----AKDIQI----PVYDTFD--G-- 465

Query: 376 SFIKKN-RSQIESI 388
                + R    SI
Sbjct: 466 ----SDLRVLSGSI 475



 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 63/303 (20%), Positives = 110/303 (36%), Gaps = 98/303 (32%)

Query: 67   QLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGY--FDIAI--VYALKKYF 122
            Q +   MD++  ++    VW         +  D+   KDT G+   DI I     L  +F
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVW---------NRADNHF-KDTYGFSILDIVINNPVNLTIHF 1676

Query: 123  SGQLEESSKE------LSKIKD-KDNTRGIVPYL--HLLIGRAMMPFSSQQAVHFFDYVR 173
             G+  +  +E         I D K  T  I   +  H         F S++ +      +
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH----STSYTFRSEKGL--LSATQ 1730

Query: 174  LTSPG-TFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSI--YK-----------D 219
             T P  T +E+ A  +L          ++ G I A  T   HS+  Y            +
Sbjct: 1731 FTQPALTLMEKAAFEDL----------KSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780

Query: 220  HFISVLLRFFLHG---QLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLA 276
              + V+   F  G   Q+ +P +++            R+ Y  IA N    G+    F +
Sbjct: 1781 SLVEVV---FYRGMTMQVAVPRDEL-----------GRSNYGMIAINP---GRVAASF-S 1822

Query: 277  IKQLKRIIDRL-----------DYK----------DLATIQLYENILN---IPFVDIMSL 312
             + L+ +++R+           +Y           DL  +    N+LN   +  +DI+ L
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882

Query: 313  QRS 315
            Q+S
Sbjct: 1883 QKS 1885



 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 57/318 (17%), Positives = 93/318 (29%), Gaps = 98/318 (30%)

Query: 118 LKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLL---IGRAMMPFSSQQAVHFFDYVRL 174
           L++ F+  L E ++  +     D+         L+   +G         +   F   + L
Sbjct: 33  LQEQFNKILPEPTEGFA----ADDEPTTP--AELVGKFLGYVSSLVEPSKVGQFDQVLNL 86

Query: 175 -----TSPGTFL--EEI--ALRNLLEITQNEVGERAFGYIRAYVTQFH---HSIYKDHFI 222
                 +   +L   +I      LL+     + +     I+ Y+T          K    
Sbjct: 87  CLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKE-LIKNYITARIMAKRPFDKKS-N 142

Query: 223 SVLLRFFLHGQLKLPDEDIVFTI--------SFFSLEEQRAIYLKIAQNSVISGKRKIGF 274
           S L R    G  +L        I         +F  EE R +Y +               
Sbjct: 143 SALFRAVGEGNAQL------VAIFGGQGNTDDYF--EELRDLY-QTYH----------VL 183

Query: 275 LA--IKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMS-LQRSTCNIPYYSLMEQDRYL 331
           +   IK     +  L    L   +++   L     +I+  L+  + N P     ++D YL
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NILEWLENPS-NTP-----DKD-YL 231

Query: 332 KKASEIIMSEIGKSLIDIDFEH---IQKDLLLDKKEPR--------HTNVSMGI------ 374
                I    IG  +  I   H     K L     E R        H   S G+      
Sbjct: 232 LSIP-ISCPLIG--V--IQLAHYVVTAKLLGFTPGELRSYLKGATGH---SQGLVTAVAI 283

Query: 375 ------ESFIKKNRSQIE 386
                 ESF    R  I 
Sbjct: 284 AETDSWESFFVSVRKAIT 301



 Score = 31.5 bits (71), Expect = 0.39
 Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 49/160 (30%)

Query: 212 FHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRK 271
           F  S  ++ F            L  P E         +  E    +L             
Sbjct: 28  FIASQLQEQFNK---------ILPEPTEGFAADDEPTTPAELVGKFL------------- 65

Query: 272 IGFLAIKQLKRIIDRLDYKDLA-TIQLYENILNIPFV-------DIMSLQRSTCNIPYYS 323
            G+++          ++   +    Q+    L   F        DI +L          +
Sbjct: 66  -GYVS--------SLVEPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTT 115

Query: 324 LMEQDRYLK---KASEIIMSEIGK---SLIDIDFEHIQKD 357
           L++    +K    A  +      K   S +   F  + + 
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL---FRAVGEG 152


>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
           protein structure initiative; 2.20A {Listeria innocua}
          Length = 187

 Score = 32.8 bits (74), Expect = 0.14
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 11/108 (10%)

Query: 151 LLIGRAMMPFSSQQAVHFFDYVRLTSPGTF------LEEIALRNLLEITQNEVGERAFGY 204
           LLI R++      +     +  +   PG F       E+ A R L E T           
Sbjct: 49  LLIKRSLTNA---EGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFG 105

Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEE 252
           +     +             ++      +    D+     I  F + E
Sbjct: 106 VFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDD--AAEIGLFPMTE 151


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.4 bits (67), Expect = 0.74
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 24/51 (47%)

Query: 276 AIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
           A+K+L+           A+++LY +  + P + I    ++T        ME
Sbjct: 21  ALKKLQ-----------ASLKLYADD-SAPALAI----KAT--------ME 47



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 23/46 (50%)

Query: 34 QCVRSLQRAL-----DEAMRGDISLQKKIPDIVKETGVQLRATHMD 74
          Q ++ LQ +L     D A           P       + ++AT M+
Sbjct: 20 QALKKLQASLKLYADDSA-----------P------ALAIKAT-ME 47


>3p1u_A SUSD homolog; structural genomics, joint center for structural
           genomics, J protein structure initiative, PSI; 2.05A
           {Parabacteroides distasonis atcc 8503}
          Length = 529

 Score = 30.4 bits (67), Expect = 0.76
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 76  FVDNRNIDAVW--IYTIISQDLSVVDDLIAKDTKGYFD-IAIVYALKKYFSGQLEESSKE 132
             D+   + VW      I+    V+  L  KD   Y + IA     + Y           
Sbjct: 63  IQDDEWNNLVWEEYLKQIASINIVIRSLTEKDKDAYANTIAFARIWRVYVHTLAA----- 117

Query: 133 LSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFF 169
                   +  G +P+    I  A  P+ S + ++  
Sbjct: 118 --------DKFGPMPFPAYEIVEANPPYKSLKDIYDE 146


>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI,
           protein structure initiative, joint center for
           structural genomics; HET: MSE; 2.20A {Escherichia coli
           K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
          Length = 269

 Score = 29.3 bits (65), Expect = 1.4
 Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 14/104 (13%)

Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYV 209
            +L+ +     +    V           G  LE+   R        EV E +   ++   
Sbjct: 152 SILLAQHTRHRNGVHTVL----AGFVEVGETLEQAVAR--------EVMEESGIKVKNLR 199

Query: 210 TQFHHSIYKDHFISVLLR-FFLHGQLKLPDEDIVFTISFFSLEE 252
                       +       +  G + +  ++++   +++  ++
Sbjct: 200 YVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELL-EANWYRYDD 242


>2e58_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5-
           methylaminomethyl-2-thiouridine, methyltransferase,
           2-codon SETS; HET: SAM; 2.50A {Aquifex aeolicus VF5}
          Length = 308

 Score = 28.4 bits (63), Expect = 2.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 325 MEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTN 369
           M+++ YLK   E  + +   SL + +F  I ++ L     P  + 
Sbjct: 1   MKREEYLKNYLESYLRKKEVSLTEEEFNVILREFLRFAYNPEESG 45


>1h16_A Formate acetyltransferase 1; lyase, glycyl radical enzyme,
           acyltransferase, acetylation; HET: COA PG4; 1.53A
           {Escherichia coli} SCOP: c.7.1.1 PDB: 1h17_A* 1h18_A*
           1mzo_A* 2pfl_A 3pfl_A 1cm5_A 1qhm_A
          Length = 759

 Score = 27.9 bits (62), Expect = 4.0
 Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 22  TDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMD-VF 76
           T+  L R ++P+  ++ ++ +         +  +++  ++K+   + R TH   VF
Sbjct: 101 TEAPLKRALIPFGGIKMIEGSCK-------AYNRELDPMIKKIFTEYRKTHNQGVF 149


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,434,542
Number of extensions: 167047
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 580
Number of HSP's successfully gapped: 18
Length of query: 396
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 302
Effective length of database: 3,414,294
Effective search space: 1031116788
Effective search space used: 1031116788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)