HHsearch alignment for GI: 254780529 and conserved domain: PRK05996
>PRK05996 motB flagellar motor protein MotB; Validated.
Probab=100.00 E-value=0 Score=488.42 Aligned_cols=336 Identities=30% Similarity=0.521 Sum_probs=220.5
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 111337688689998216888878874318879999999999999999975089999999999853554320-3665555
Q gi|254780529|r 5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL-MTASKGI 83 (343)
Q Consensus 5 ~~~~~~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~-~~~~~~~ 83 (343)
T Consensus 2 ~~~~~~~~eiIIIKR~~~~~~~gHHGGAWKVAYADFmTAMMAFFLvMWLlnaTteeqr~gIA~YFnP~~l~d~~~~~kG~ 81 (431)
T PRK05996 2 EIEHEGKNEIIIVRRGGHDDHEGHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPVKLTDRKPSPKGL 81 (431)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 87768987428999614889999977323889988999999999999980599999999999873843212245643344
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC--------C--------------CCCC-----------------------CCCCC--
Q ss_conf 55567677666665544455566--------7--------------6665-----------------------65667--
Q gi|254780529|r 84 FDEQNPPERSSQNKIDLSIDEHI--------T--------------KNSV-----------------------DLKIG-- 116 (343)
Q Consensus 84 ~~~~~~~~~~~~~~~d~~~~~~~--------~--------------~~~~-----------------------~~~~~-- 116 (343)
T Consensus 82 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~lF~~Py~vl~~ia~~~~~~~~~s~~g~g~~~~~~~~ 161 (431)
T PRK05996 82 KDPGEQKPGKSKFESDQRVEGSPAVVGDTTTRPAGDQTNYSEADLFRNPYAVLAEIAHEVGVLANVSAKGDGGAAQSGPA 161 (431)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56433455544334444566764434444456544333310333204613555443012221112234566654445665
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCC-------------CCCCCCHHH-----------
Q ss_conf -766554432112221112332111112---------2222334322-------------222220012-----------
Q gi|254780529|r 117 -STNQKKQYQRLENNIFYLSNSQQSEHC---------KNSLTRDSEK-------------GKDLCKSTD----------- 162 (343)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-------------~~~~~~~~~----------- 162 (343)
T Consensus 162 ~G~~gG~~~rDPFdP~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (431)
T PRK05996 162 TGADGGEAYRDPFDPDFWSKQVEVPLAGKALPPKEAGEQAFDEAATELAKGAGRKPSQLTTDAKAAPAAASSASLPPAPK 241 (431)
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45456633357656201110123333444456544445543211111122334565544443334443322334555555
Q ss_pred HHHCCC-----------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCC
Q ss_conf 321001-----------110012465213578878889999999999999975553321013114511453499997034
Q gi|254780529|r 163 LEKSIN-----------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ 231 (343)
Q Consensus 163 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~ 231 (343)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~l~~~v~v~~t~eGLrIqI~D~ 320 (431)
T PRK05996 242 TKPQTAPLPQAKPAKAETQAELIADLKKAAAGEPAPQQGKAEKLQAAIAAALGGI-AGKLMPGVTVTPVEGGLLISLTDQ 320 (431)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCEEEEEEEEC
T ss_conf 6554444532110244443310011444322223455789999999999987765-676336528986599279999858
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEE
Q ss_conf 56745556875468356565443678986127833898731467667874106999999999999999986999657122
Q gi|254780529|r 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 (343)
Q Consensus 232 ~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~ 311 (343)
T Consensus 321 ~~~~MF~~GSA~p~p~~~~lL~~Ia~vL~~~pn~I~I~GHTDa~Pf~~~~y~NWeLSa~RA~aARr~L~~gGl~~~RI~r 400 (431)
T PRK05996 321 VDYGMFAIGSAVPRAELVLAMEKIGQLLAEQPGAVIIRGHTDARPFKSATYDNWRLSTARAQMAYYMLVRGGLDEKRILR 400 (431)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf 99988477977568899999999999996389817998756887777889984211189999999999985998546667
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 563033488889885213375599999569
Q gi|254780529|r 312 ISGFAHHRLKIASDPMNSANRRIDILVEDR 341 (343)
Q Consensus 312 v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~ 341 (343)
T Consensus 401 V~G~ADr~p~~~~dP~a~~NRRIeILlr~~ 430 (431)
T PRK05996 401 VEGYADRRPKLPNDPNAAANRRIEILIQAK 430 (431)
T ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 887135676888999886457489997058