HHsearch alignment for GI: 254780529 and conserved domain: PRK05996

>PRK05996 motB flagellar motor protein MotB; Validated.
Probab=100.00  E-value=0  Score=488.42  Aligned_cols=336  Identities=30%  Similarity=0.521  Sum_probs=220.5

Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf             111337688689998216888878874318879999999999999999975089999999999853554320-3665555
Q gi|254780529|r    5 GDKNQENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNL-MTASKGI   83 (343)
Q Consensus         5 ~~~~~~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~-~~~~~~~   83 (343)
T Consensus         2 ~~~~~~~~eiIIIKR~~~~~~~gHHGGAWKVAYADFmTAMMAFFLvMWLlnaTteeqr~gIA~YFnP~~l~d~~~~~kG~   81 (431)
T PRK05996          2 EIEHEGKNEIIIVRRGGHDDHEGHHGGVWKIAYADFMTAMMAFFLVMWLINAANEETKAAVASYFNPVKLTDRKPSPKGL   81 (431)
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             87768987428999614889999977323889988999999999999980599999999999873843212245643344


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC--------C--------------CCCC-----------------------CCCCC--
Q ss_conf             55567677666665544455566--------7--------------6665-----------------------65667--
Q gi|254780529|r   84 FDEQNPPERSSQNKIDLSIDEHI--------T--------------KNSV-----------------------DLKIG--  116 (343)
Q Consensus        84 ~~~~~~~~~~~~~~~d~~~~~~~--------~--------------~~~~-----------------------~~~~~--  116 (343)
T Consensus        82 ~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~lF~~Py~vl~~ia~~~~~~~~~s~~g~g~~~~~~~~  161 (431)
T PRK05996         82 KDPGEQKPGKSKFESDQRVEGSPAVVGDTTTRPAGDQTNYSEADLFRNPYAVLAEIAHEVGVLANVSAKGDGGAAQSGPA  161 (431)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             56433455544334444566764434444456544333310333204613555443012221112234566654445665


Q ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCC-------------CCCCCCHHH-----------
Q ss_conf             -766554432112221112332111112---------2222334322-------------222220012-----------
Q gi|254780529|r  117 -STNQKKQYQRLENNIFYLSNSQQSEHC---------KNSLTRDSEK-------------GKDLCKSTD-----------  162 (343)
Q Consensus       117 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-------------~~~~~~~~~-----------  162 (343)
T Consensus       162 ~G~~gG~~~rDPFdP~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (431)
T PRK05996        162 TGADGGEAYRDPFDPDFWSKQVEVPLAGKALPPKEAGEQAFDEAATELAKGAGRKPSQLTTDAKAAPAAASSASLPPAPK  241 (431)
T ss_pred             CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             45456633357656201110123333444456544445543211111122334565544443334443322334555555


Q ss_pred             HHHCCC-----------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCC
Q ss_conf             321001-----------110012465213578878889999999999999975553321013114511453499997034
Q gi|254780529|r  163 LEKSIN-----------KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQ  231 (343)
Q Consensus       163 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~  231 (343)
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~-~~~l~~~v~v~~t~eGLrIqI~D~  320 (431)
T PRK05996        242 TKPQTAPLPQAKPAKAETQAELIADLKKAAAGEPAPQQGKAEKLQAAIAAALGGI-AGKLMPGVTVTPVEGGLLISLTDQ  320 (431)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCEEEEEEEEC
T ss_conf             6554444532110244443310011444322223455789999999999987765-676336528986599279999858


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEE
Q ss_conf             56745556875468356565443678986127833898731467667874106999999999999999986999657122
Q gi|254780529|r  232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK  311 (343)
Q Consensus       232 ~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~  311 (343)
T Consensus       321 ~~~~MF~~GSA~p~p~~~~lL~~Ia~vL~~~pn~I~I~GHTDa~Pf~~~~y~NWeLSa~RA~aARr~L~~gGl~~~RI~r  400 (431)
T PRK05996        321 VDYGMFAIGSAVPRAELVLAMEKIGQLLAEQPGAVIIRGHTDARPFKSATYDNWRLSTARAQMAYYMLVRGGLDEKRILR  400 (431)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEE
T ss_conf             99988477977568899999999999996389817998756887777889984211189999999999985998546667


Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf             563033488889885213375599999569
Q gi|254780529|r  312 ISGFAHHRLKIASDPMNSANRRIDILVEDR  341 (343)
Q Consensus       312 v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~  341 (343)
T Consensus       401 V~G~ADr~p~~~~dP~a~~NRRIeILlr~~  430 (431)
T PRK05996        401 VEGYADRRPKLPNDPNAAANRRIEILIQAK  430 (431)
T ss_pred             EEEECCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf             887135676888999886457489997058