HHsearch alignment for GI: 254780529 and conserved domain: PRK06742
>PRK06742 flagellar motor protein MotS; Reviewed.
Probab=100.00 E-value=0 Score=378.37 Aligned_cols=218 Identities=22% Similarity=0.399 Sum_probs=164.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88788743188799999999999999999750899999999998535543203665555555676776666655444555
Q gi|254780529|r 25 DTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKIDLSIDE 104 (343)
Q Consensus 25 ~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 104 (343)
T Consensus 4 ~p~~g~p~WlvtyaDlmTLLl~fFVlL~a~S~~d~~k~~~~~~~~~~~~~~-----------~~------~--------- 57 (225)
T PRK06742 4 RPQKGSPRWMTTFTDLTMLLLTFFVLLVATSKQDAVKLSKMLEKFSDTEQV-----------DA------K--------- 57 (225)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC-----------CC------C---------
T ss_conf 999998537889999999999999999998551599999999985200035-----------76------4---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 66766656566776655443211222111233211111222223343222222200123210011100124652135788
Q gi|254780529|r 105 HITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPLSKEKIL 184 (343)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T Consensus 58 -~~~~~~~~-------------------------------------------~~~~--------------------~~~~ 73 (225)
T PRK06742 58 -VMENTIPD-------------------------------------------ISHE--------------------KNDE 73 (225)
T ss_pred -CCCCCCCC-------------------------------------------CCCC--------------------CCHH
T ss_conf -45678886-------------------------------------------4444--------------------4214
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 78889999999999999975553321013114511453499997034567455568754683565654436789861278
Q gi|254780529|r 185 AMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE 264 (343)
Q Consensus 185 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~ 264 (343)
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~----~~~~~v~~~~~~~gl~I~l~~~---~lF~~Gsa~l~p~~~~~L~~la~~l~~~~~ 146 (225)
T PRK06742 74 KMISKKRMDELYKKLKAYVDN----NGISQVNVYREDTGVSVVIVDN---LIFDTGDANVKPEAKEIISQLVGFFQSVPN 146 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCEEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 455589999999999999973----7876438997287389996787---776898432396699999999999965997
Q ss_pred CEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHH-CCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEEC
Q ss_conf 33898731467667874-10699999999999999998-699965712256303348888988521--337559999956
Q gi|254780529|r 265 VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVED 340 (343)
Q Consensus 265 ~i~IeGHTD~~p~~g~~-~~Nw~LS~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~ 340 (343)
T Consensus 147 ~I~I~GHTD~~pi~~~~~~sNWeLSsaRA~~V~r~l~~~~gi~~~rl~-~~Gygd~~P~~~n~t~e~ra~NRRVeI~i~~ 225 (225)
T PRK06742 147 PIVVEGHTDSRPIHNDKFPSNWELSSARAANMIHHLIEVYNVDDKRLA-AVGYADTKPVVPNDSPQNWEKNRRVVIYIKE 225 (225)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEECCCCCCCCCCCHHHHHHCCCEEEEEEC
T ss_conf 089999678876667788864999999999999999983699931489-9865577617999494468537966999839