HHsearch alignment for GI: 254780529 and conserved domain: PRK09038
>PRK09038 flagellar motor protein MotD; Reviewed.
Probab=100.00 E-value=0 Score=428.62 Aligned_cols=243 Identities=22% Similarity=0.367 Sum_probs=175.6
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98216888878874318879999999999999999975089999999999853554320366555555567677666665
Q gi|254780529|r 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNK 97 (343)
Q Consensus 18 kr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (343)
T Consensus 3 ~Rrk~~~-~~~~~~aW~vtyADlmTLLlaFFVlL~smS~~d~~K~~~~~~sl~~af~~~~~~~~~~-------~~~~~~- 73 (285)
T PRK09038 3 RRRRHHE-EHENHERWLVSYADFITLLFAFFVVMYAISSVNEGKYKVLSEALTGAFNGPDRSLKPI-------PIGEEQ- 73 (285)
T ss_pred CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCC-
T ss_conf 7767887-8999861888999999999999999999725899999999999998735877666766-------677777-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 54445556676665656677665544321122211123321111122222334322222220012321001110012465
Q gi|254780529|r 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 (343)
Q Consensus 98 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (343)
T Consensus 74 ---------~~~~~~~~---------------------------------------------------------~~~~~~ 87 (285)
T PRK09038 74 ---------PLSPEPDR---------------------------------------------------------PSVIKA 87 (285)
T ss_pred ---------CCCCCCCC---------------------------------------------------------CCCCCC
T ss_conf ---------77877776---------------------------------------------------------554555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21357887888999999999999997555332101311451145349999703456745556875468356565443678
Q gi|254780529|r 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 (343)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~ 257 (343)
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~---~~~v~v~~~~~gl~I~l~~---~~lF~~GSA~L~~~~~~lL~~ia~ 161 (285)
T PRK09038 88 GQPEQAQEARAQDQLKTIADDLRKALGPLID---SGQVTVRRNELWIEIEINS---SLLFGSGDALLSDEAFAILEKVAE 161 (285)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEEEECCCEEEEEECC---CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5431266788999999999999999986411---5835999739979999568---868688843249879999999999
Q ss_pred HHHHCCCCEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEE
Q ss_conf 986127833898731467667874-10699999999999999998699965712256303348888988521--337559
Q gi|254780529|r 258 VLAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 (343)
Q Consensus 258 ~l~~~~~~i~IeGHTD~~p~~g~~-~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRV 334 (343)
T Consensus 162 ~L~~~~n~I~I~GHTD~~Pi~~~~~~sNWeLSaaRA~aV~r~L~~~Gi~p~Rl~-~~Gygd~~P~~~N~t~egRa~NRRV 240 (285)
T PRK09038 162 VLKPFPNPIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLADDGVAPSRLA-AVGYGEFQPVADNDTAEGRARNRRV 240 (285)
T ss_pred HHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE-EEEECCCCCCCCCCCCHHHHHCCCE
T ss_conf 998438728999857887655566786489999999999999997599967879-9876578768999480025307876
Q ss_pred EEEEECCC
Q ss_conf 99995699
Q gi|254780529|r 335 DILVEDRQ 342 (343)
Q Consensus 335 Ei~i~~~~ 342 (343)
T Consensus 241 eIvILr~~ 248 (285)
T PRK09038 241 VLVILRNL 248 (285)
T ss_pred EEEEECCH
T ss_conf 99996786