HHsearch alignment for GI: 254780529 and conserved domain: PRK12799
>PRK12799 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=0 Score=436.52 Aligned_cols=261 Identities=31% Similarity=0.515 Sum_probs=198.1
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHCCCCCCCCCCCC
Q ss_conf 37688689998216888878874318879999999999999999975089999999999853-55432036655555556
Q gi|254780529|r 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN-PFGKNLMTASKGIFDEQ 87 (343)
Q Consensus 9 ~~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~-p~~~~~~~~~~~~~~~~ 87 (343)
T Consensus 3 ~~n~PiIIiKKrkkk~g~GHHGGAWKVAYADFvTAMMAFFLVLWLL~stt~eqr~gIAdYFrtPl~va~~~G~~s-~~s~ 81 (424)
T PRK12799 3 HQNHPVILVKKRKTKHGAAHYGGSWKIAYADFMTAMMAFFLVMWLLAVSSPQELTQIAEYFRTPLKVALTSGDKS-SSST 81 (424)
T ss_pred CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHCCCCCCC-CCCC
T ss_conf 888886999887557898987604799999999999999999998548999999999998508035432578777-8877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC
Q ss_conf 76776666655444555667666565667766554432112221112332111112222233432222222001232100
Q gi|254780529|r 88 NPPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSI 167 (343)
Q Consensus 88 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (343)
T Consensus 82 sp-----------------------IpgGG~dpt------~~--------------------~gev~~----------~~ 102 (424)
T PRK12799 82 SP-----------------------IPGGGDDPT------QQ--------------------VGEVRK----------QI 102 (424)
T ss_pred CC-----------------------CCCCCCCCC------CC--------------------CCCHHC----------CC
T ss_conf 86-----------------------789998733------23--------------------321110----------23
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCH
Q ss_conf 11100124652135788788899999999999999755-53321013114511453499997034567455568754683
Q gi|254780529|r 168 NKEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSG-LVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLP 246 (343)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~ 246 (343)
T Consensus 103 -------------~~~~s~~e~~rl~~L~e~Leq~Ie~~P~L~~lk~qLlIdiTpEGLRIQIvD~qnRPMF~~GSA~l~P 169 (424)
T PRK12799 103 -------------NSEESRQEIHRLNKLREKLDQLIESDPRLKALRPHLLINMMDEGLRIQIIDSQNRPMFKMGSAQVEP 169 (424)
T ss_pred -------------CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCH
T ss_conf -------------3566788999999999999999972987998741746997089358999857999760127775788
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCC
Q ss_conf 565654436789861278338987314676678-7-41069999999999999999869996571225630334888898
Q gi|254780529|r 247 ETIVVLQKIGEVLAHSTEVISIRGHTDASPFRN-I-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS 324 (343)
Q Consensus 247 ~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g-~-~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n 324 (343)
T Consensus 170 y~rdIL~aIApvLn~vPNkIsISGHTDA~PYa~G~~gYSNWELSADRANAARReLvaGGm~e~KvlRVvGmAst~~ld~~ 249 (424)
T PRK12799 170 YMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGERGYSNWELSADRANASRRELLAGGLDEGKILRVVGMASTMRLKEQ 249 (424)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
T ss_conf 99999999999986589834886316885556899887656223666879999999768981136789851213414667
Q ss_pred CCCCCCCCEEEEEEECCC
Q ss_conf 852133755999995699
Q gi|254780529|r 325 DPMNSANRRIDILVEDRQ 342 (343)
Q Consensus 325 ~t~~~~NRRVEi~i~~~~ 342 (343)
T Consensus 250 ~p~~PvNRRISIiVLnK~ 267 (424)
T PRK12799 250 ASDDPVNRRISILVLNKQ 267 (424)
T ss_pred CCCCCCCCEEEEEEECHH
T ss_conf 999854365789996668