HHsearch alignment of GI: 254780529 and MMDB domain: 2zf8_A_155-278
>2zf8_A (A:155-278) MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=99.90 E-value=7.7e-24 Score=177.80 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE
Q ss_conf 67455568754683565654436789861278--3389873146766787410699999999999999998699965712
Q gi|254780529|r 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 (343)
Q Consensus 233 ~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~--~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~ 310 (343)
..++|++||+.|++.+...|++++.+|+.+|+ .|.|+||||+. |.+.+||.||.+||.+|++||...|+++.||.
T Consensus 8 ~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~~I~I~Ghtd~~---g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~ri~ 84 (124)
T 2zf8_A 8 TILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDST---DGKSASQSLSERRAESLRDYFQSLGLPEDRIQ 84 (124)
T ss_dssp EECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC----------CCCHHHHHHHHHHHHHHHHHHSCCTTSEE
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 289938997116999999999999999868996589999874899---98788799999999999999998599979989
Q ss_pred EEEECCCCCCCCCCCCCC--CCCCEEEEEEECCC
Q ss_conf 256303348888988521--33755999995699
Q gi|254780529|r 311 KISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 (343)
Q Consensus 311 ~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~~ 342 (343)
+.|||+++|+++|++.. ++||||||+|....
T Consensus 85 -~~g~G~~~p~~~~~~~~~~~~NRRVeI~i~~~~ 117 (124)
T 2zf8_A 85 -VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 117 (124)
T ss_dssp -CCEEC------------------CEEEECCCCC
T ss_pred -EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEE
T ss_conf -999756577799949889973498999998679